RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 BDKRB1P46663 353 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR3A4PP47883 348 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 DEFB133Q30KQ1 61 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CNPY1Q3B7I2 92 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 BEX5Q5H9J7 111 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TTC32Q5I0X7 151 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SUMO4Q6EEV6 95 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RANBP10Q6VN20 620 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LRRTM3Q86VH5 581 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FAM156AQ8NDB6 213 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SEMA6DQ8NFY4 1073 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR1S2Q8NGQ3 325 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR52B2Q96RD2 323 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TTYH3Q9C0H2 523 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SMG9Q9H0W8 520 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM38AQ9H6F2 299 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 VAPAQ9P0L0 249 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 IL17BQ9UHF5 180 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RNF225M0QZC1 329 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 M0R2Z0 102 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 IL4P05112 153 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ETFAP13804 333 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CEBPBP17676 345 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 MIPP30301 263 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LBX1P52954 281 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TAS2R40P59535 323 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ARHGAP8P85298 464 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ERV3-1Q14264 604 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GK3PQ14409 553 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 COL13A1Q5TAT6 717 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FCRLBQ6BAA4 426 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SIAH1Q8IUQ4 282 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A24Q8N4F4 322 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF561Q8N587 486 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CELF5Q8N6W0 485 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR2AE1Q8NHA4 323 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 MIB2Q96AX9 1013 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FBXO17Q96EF6 278 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ARHGDIGQ99819 225 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 P2RY13Q9BPV8 354 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SLCO5A1Q9H2Y9 848 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GHITMQ9H3K2 345 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 DDX31Q9H8H2 851 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SIAEQ9HAT2 523 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PARP11Q9NR21 331 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 BABAM2Q9NXR7 383 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 EHFQ9NZC4 300 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PLLPQ9Y342 182 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TBL2Q9Y4P3 447 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SHROOM2Q13796 1616 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 KDM4FA0A1W2PPD8 638 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ERVV-1B6SEH8 477 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SOX15O60248 233 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SLC16A7O60669 478 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 STSP08842 583 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CDK4P11802 303 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 UGT2B7P16662 529 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 HOXD3P31249 432 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR1E2P47887 323 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RPS21P63220 83 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 AQP6Q13520 282 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TXNDC8Q6A555 127 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RHBDD2Q6NTF9 364 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 H3F3CQ6NXT2 135 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 B3GNT9Q6UX72 402 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SLC51AQ86UW1 340 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 COMMD7Q86VX2 200 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CDC20BQ86Y33 519 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 HS3ST5Q8IZT8 346 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LGI4Q8N135 537 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 EIF4E3Q8N5X7 224 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR51L1Q8NGJ5 315 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR1L3Q8NH93 324 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SCRN2Q96FV2 425 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GJD4Q96KN9 370 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 COQ10AQ96MF6 247 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PPP1R3CQ9UQK1 317 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 METP08581 1390 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CDC42BPBQ9Y5S2 1711 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CHD3Q12873 2000 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 A0A1W2PP55 124 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 H3BSA7 217 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GPR39O43194 453 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LSM8O95777 96 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FOXN2P32314 431 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 AQP4P55087 323 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TUBA4AP68366 448 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 DEFB110Q30KQ9 67 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ADAM5Q6NVV9 412 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 Q6ZSR6 202 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FAM183BPQ6ZVS7 135 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM150AQ86TG1 271 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 LURAP1LQ8IV03 231 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF781Q8N8C0 355 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FAM151AQ8WW52 585 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ORAI1Q96D31 301 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 BTN2A3PQ96KV6 586 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GABARAPL1Q9H0R8 117 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 UNC93B1Q9H1C4 597 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms