RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CLDN5O00501 218 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 LRFN4Q6PJG9 635 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 KIAA1958Q8N8K9 716 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 L3MBTL4Q8NA19 623 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 IL17RCQ8NAC3 791 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ANAPC16Q96DE5 110 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 UCK1Q9HA47 277 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FBRSL1Q9HCM7 1045 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CTSLP07711 333 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CBR1P16152 277 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 MMP11P24347 488 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 DPP4P27487 766 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 PDE7AQ13946 482 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 BOLLQ8N9W6 283 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CREB3L4Q8TEY5 395 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 DAZLQ92904 295 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 KIRREL1Q96J84 757 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 PCDHGC4Q9Y5F7 938 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF724A8MTY0 619 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 RPL24P83731 157 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 NCR3LG1Q68D85 454 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ISCA2Q86U28 154 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 DCAF4L2Q8NA75 395 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 LRRC3BQ96PB8 259 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 NCOR1P1Q9H4R4 102 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 MYOTQ9UBF9 498 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ANKRD36A6QL64 1941 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ARNTP27540 789 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 GRPRP30550 384 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 EMP2P54851 167 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF90Q03938 601 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 RTL8BQ17RB0 113 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FAM209BQ5JX69 171 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 SLC16A14Q7RTX9 510 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ZCCHC10Q8TBK6 192 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 PXYLP1Q8TE99 480 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF552Q9H707 407 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 A0A1W2PPK0 400 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 KHSRPQ92945 711 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 MS4A10Q96PG2 267 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 EGLN3Q9H6Z9 239 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 DCAF16Q9NXF7 216 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CSAG2Q9Y5P2 127 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FA2HQ7L5A8 372 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 EMG1Q92979 244 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 PIGQQ9BRB3 760 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 GCGP01275 180 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 TMEM225BP0DP42 221 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 PREPP48147 710 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FAHD2BQ6P2I3 314 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 OR9A2Q8NGT5 310 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 OR4K13Q8NH42 304 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FUBP1Q96AE4 644 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 FAHD2AQ96GK7 314 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 AMDHD1Q96NU7 426 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 LMF1Q96S06 567 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 POLLQ9UGP5 575 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 MTCL1Q9Y4B5 1905 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 C9J4A7 227 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 OVCH2Q7RTZ1 564 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CISD2Q8N5K1 135 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 OR2G2Q8NGZ5 317 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 NAA50Q9GZZ1 169 aaKnown RBP11.75□□□□□ -0.53
COL6A3-203ENST00000353578 RHOFQ9HBH0 211 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 UBQLN4Q9NRR5 601 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 CA14Q9ULX7 337 aa11.75□□□□□ -0.53
COL6A3-203ENST00000353578 RGPD1P0DJD0 1748 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CLDN34H7C241 214 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 K7ERQ8 282 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF728P0DKX0 622 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF343Q6P1L6 599 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 TMEM88Q6PEY1 159 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 DPPA4Q7L190 304 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 SOX7Q9BT81 388 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ASIC5Q9NY37 505 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 TAC3Q9UHF0 121 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 DMRT1Q9Y5R6 373 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 KIR2DS1A0A191URI9 304 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 FAM24AA6NFZ4 105 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 YJEFN3A6XGL0 299 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 VNN1O95497 513 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 KIR2DS4P43632 304 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 KIR2DS1Q14954 304 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF534Q76KX8 674 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 OR5L2Q8NGL0 311 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 OR10D4PQ8NGN7 298 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 HUS1BQ8NHY5 278 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 OR10C1Q96KK4 312 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 PACRGQ96M98 296 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 DPH2Q9BQC3 489 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-203ENST00000353578 LRFN3Q9BTN0 628 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ELOVL2Q9NXB9 296 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 MPIG6BO95866 241 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 PTHP01270 115 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 ISL1P61371 349 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CTF1Q16619 201 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 CTSL3PQ5NE16 218 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 NADSYN1Q6IA69 706 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 C12orf54Q6X4T0 127 aa11.74□□□□□ -0.53
COL6A3-203ENST00000353578 PRR11Q96HE9 360 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms