RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 EPHA4P54764 986 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 RPL18Q07020 188 aaKnown RBP20.12■□□□□ 0.81
UPF3A-201ENST00000351487 DYRK1AQ13627 763 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 C6orf183Q5T699 404 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 FAM199XQ6PEV8 388 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-201ENST00000351487 OGFOD3Q6PK18 319 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF721Q8TF20 911 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 TSLPQ969D9 159 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 KTI12Q96EK9 354 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-201ENST00000351487 TSSK2Q96PF2 358 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 NDEL1Q9GZM8 345 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 MRPS7Q9Y2R9 242 aaKnown RBP20.12■□□□□ 0.81
UPF3A-201ENST00000351487 MTCH2Q9Y6C9 303 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 PSMD9O00233 223 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 UPK3AO75631 287 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 ABHD16AO95870 558 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 TACR3P29371 465 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 SLC6A8P48029 635 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 RAG2P55895 527 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 KLF9Q13886 244 aaPredicted RBP20.12■□□□□ 0.81
UPF3A-201ENST00000351487 TTLL10Q6ZVT0 673 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 FAM220AQ7Z4H9 259 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 CDC20BQ86Y33 519 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF687Q8N1G0 1237 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 MAP6Q96JE9 813 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 KLHDC2Q9Y2U9 406 aa20.12■□□□□ 0.81
UPF3A-201ENST00000351487 TRAV6A0A075B6T7 132 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 TMEM72A0PK05 275 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 LMO7DNF2Z398 122 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ITGA10O75578 1167 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 OR2B3O76000 313 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 F13BP05160 661 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 KCNAB1Q14722 419 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 C14orf28Q4W4Y0 310 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 MESTQ5EB52 335 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 SLC22A10Q63ZE4 541 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 NANOGNBQ7Z5D8 188 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 CMTM4Q8IZR5 234 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 DEFB119Q8N690 84 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ADOQ96SZ5 270 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 MED28Q9H204 178 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 FKRPQ9H9S5 495 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF275Q9NSD4 429 aaPredicted RBP20.11■□□□□ 0.81
UPF3A-201ENST00000351487 GRHPRQ9UBQ7 328 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 MRM2Q9UI43 246 aaKnown RBP20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ICOSLGO75144 302 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 SRFP11831 508 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 DPP4P27487 766 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 OR1D4P47884 311 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 FCN2Q15485 313 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ELAVL1Q15717 326 aaKnown RBP20.11■□□□□ 0.81
UPF3A-201ENST00000351487 DEFB133Q30KQ1 61 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 OR2T4Q8NH00 348 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF563Q8TA94 476 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 HYLS1Q96M11 299 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 TSPAN32Q96QS1 320 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 OR2M2Q96R28 347 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 KLHDC3Q9BQ90 382 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 MRI1Q9BV20 369 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 CACNG6Q9BXT2 260 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 SLC25A18Q9H1K4 315 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 PLEKHA1Q9HB21 404 aa20.11■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF346Q9UL40 294 aaKnown RBP20.11■□□□□ 0.81
UPF3A-201ENST00000351487 A8MUA0 341 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 DCTN6O00399 190 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ARHGEF9O43307 516 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF780AO75290 641 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-201ENST00000351487 OR8G3PP0DMU2 310 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 GIFP27352 417 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 DCAF7P61962 342 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF117Q03924 483 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ALKBH1Q13686 389 aaKnown RBP20.1■□□□□ 0.81
UPF3A-201ENST00000351487 RNASE12Q5GAN4 147 aaKnown RBP20.1■□□□□ 0.81
UPF3A-201ENST00000351487 NKAIN2Q5VXU1 208 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 GPR139Q6DWJ6 353 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 LAMTOR1Q6IAA8 161 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ORAI1Q96D31 301 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 SLC25A38Q96DW6 304 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 MNTQ99583 582 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 YIPF2Q9BWQ6 316 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ZNF576Q9H609 170 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 V9GY05 133 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ANKRD34BA5PLL1 514 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 TRABD2BA6NFA1 517 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ADRB1P08588 477 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 STOMP27105 288 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 Q499Y3 187 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 SNAP47Q5SQN1 464 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 HES5Q5TA89 166 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 LIPNQ5VXI9 398 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 SDR16C5Q8N3Y7 309 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-201ENST00000351487 RTN4RQ9BZR6 473 aa20.1■□□□□ 0.81
UPF3A-201ENST00000351487 TSPAN10Q9H1Z9 355 aaPredicted RBP20.1■□□□□ 0.81
UPF3A-201ENST00000351487 SMLR1H3BR10 107 aa20.09■□□□□ 0.81
UPF3A-201ENST00000351487 MAPK3P27361 379 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-201ENST00000351487 HNRNPKP61978 463 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF3A-201ENST00000351487 RPL6Q02878 288 aaKnown RBP20.09■□□□□ 0.81
UPF3A-201ENST00000351487 EBPQ15125 230 aaKnown RBP20.09■□□□□ 0.81
UPF3A-201ENST00000351487 CD276Q5ZPR3 534 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms