RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 GOLGA4Q13439 2230 aaKnown RBP6.21□□□□□ -1.41
VPS39-202ENST00000348544 TRBV23-1A0A0A0MS06 115 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 NPIPA5A0A0B4J1W7 369 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CXorf51AA0A1B0GTR3 108 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 FAM25EA8MYX2 175 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 NPIPA7E9PJI5 369 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CCSO14618 274 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SCAMP1O15126 338 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 FGF16O43320 207 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ERI3O43414 337 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 XRCC3O43542 346 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 GPRIN2O60269 458 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ICOSLGO75144 302 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR2F2O95006 317 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ITGB2P05107 769 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR4E1P0C645 316 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 NPIPA8P0DM63 369 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 GTF2F2P13984 249 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CBR1P16152 277 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 HIST1H1CP16403 213 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 SYN1P17600 705 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CSNK2A2P19784 350 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 CERS1P27544 350 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 AGTR1P30556 359 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 FAUP35544 74 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 ST8SIA6P61647 398 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 LTBQ06643 244 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PDZK1IP1Q13113 114 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR2F1Q13607 317 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SLC9A5Q14940 896 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 AMZ1Q400G9 498 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 LRRC37A5PQ49AS3 106 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 MRPL2Q5T653 305 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 LIPNQ5VXI9 398 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 NKAIN2Q5VXU1 208 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 MFSD12Q6NUT3 480 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 RPL13AP3Q6NVV1 102 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SLC48A1Q6P1K1 146 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ZNF813Q6ZN06 617 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PARS2Q7L3T8 475 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 KRT77Q7Z794 578 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 LRRTM1Q86UE6 522 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ADIPOR2Q86V24 386 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 RNF113BQ8IZP6 322 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 SPAG16Q8N0X2 631 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ACOT4Q8N9L9 421 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR7G2Q8NG99 324 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR2L2Q8NH16 312 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ADAMTS15Q8TE58 950 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ASB13Q8WXK3 278 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PHYHIPQ92561 330 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 TFGQ92734 400 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 PHYHIPLQ96FC7 376 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PITHD1Q9GZP4 211 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 RSPH9Q9H1X1 276 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 KCNK15Q9H427 330 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 TMEM231Q9H6L2 316 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 MTHFD2LQ9H903 347 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 PRSS16Q9NQE7 514 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PRDM7Q9NQW5 492 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 C14orf105Q9NVL8 296 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SLC23A2Q9UGH3 650 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 GPN3Q9UHW5 284 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 ZNF281Q9Y2X9 895 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ETV7Q9Y603 341 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 TRAV8-7A0A075B6U6 113 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 TBC1D3EA0A087X179 549 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SULT2B1O00204 365 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 TO15178 435 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 KCNAB3O43448 404 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 RNGTTO60942 597 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 CLEC3AO75596 197 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CSF1P09603 554 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 AKAIN1P0CW23 69 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 HIST1H1TP22492 207 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 GRPRP30550 384 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 BCL6P41182 706 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 SOX2P48431 317 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 GGTLC2Q14390 218 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 NR0B2Q15466 257 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 DUSP5Q16690 384 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 RAB12Q6IQ22 244 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 C11orf87Q6NUJ2 197 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 RANBP3LQ86VV4 465 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 TMPRSS12Q86WS5 348 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 PCSK9Q8NBP7 692 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR5M8Q8NGP6 311 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 OR8S1Q8NH09 359 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 ZPLD1Q8TCW7 415 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 CD99L2Q8TCZ2 262 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 FGF13Q92913 245 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 MS4A6EQ96DS6 147 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 MRPL48Q96GC5 212 aaKnown RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 LINC00615Q96LM1 132 aaPredicted RBP6.21□□□□□ -1.42
VPS39-202ENST00000348544 SFXN1Q9H9B4 322 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 STARD7Q9NQZ5 370 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 FBXO34Q9NWN3 711 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 STEAP1Q9UHE8 339 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 DTX4Q9Y2E6 619 aa6.21□□□□□ -1.42
VPS39-202ENST00000348544 HTTP42858 3142 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms