RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 CACNA1CQ13936 2221 aa14.04□□□□□ -0.16
UPF3B-202ENST00000345865 VPS13AQ96RL7 3174 aa14.04□□□□□ -0.16
UPF3B-202ENST00000345865 IGHV1OR21-1A0A087WYE8 117 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 OR6C70A6NIJ9 312 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SRMP19623 302 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 RPS27P42677 84 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 HSD11B2P80365 405 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 EFR3AQ14156 821 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 EBPQ15125 230 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 HSD17B12Q53GQ0 312 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 STPG1Q5TH74 334 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MTFR2Q6P444 385 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 OVCH1Q7RTY7 1134 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MARCH3Q86UD3 253 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 JAZF1Q86VZ6 243 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TCTE3Q8IZS6 198 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 C7orf57Q8NEG2 295 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 CADM4Q8NFZ8 388 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 ZNF563Q8TA94 476 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 CREB3L1Q96BA8 519 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TSPAN32Q96QS1 320 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 OR1F2PQ96R84 312 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TMEM246Q9BRR3 403 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MFRPQ9BY79 579 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SLC25A18Q9H1K4 315 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TSPAN10Q9H1Z9 355 aaPredicted RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 RXFP3Q9NSD7 469 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MCUBQ9NWR8 336 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 ABRACLQ9P1F3 81 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MRPS7Q9Y2R9 242 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 CACNG2Q9Y698 323 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TCRBV16S1A1N1A0A5B0 115 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 ORC5O43913 435 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 PIAS2O75928 621 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 OR8G3PP0DMU2 310 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 APEHP13798 732 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SDHBP21912 280 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 CSF2RBP32927 897 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SLC25A1P53007 311 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SMAD4Q13485 552 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 POMZP3Q6PJE2 187 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 PRSS45Q7RTY3 260 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 TIGD4Q8IY51 512 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 IZUMO1Q8IYV9 350 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 OR6V1Q8N148 313 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 CEP76Q8TAP6 659 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 LGALS14Q8TCE9 139 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MAP6Q96JE9 813 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 ZFP3Q96NJ6 502 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 MRM2Q9UI43 246 aaKnown RBP14.03□□□□□ -0.16
UPF3B-202ENST00000345865 SPATA2Q9UM82 520 aa14.03□□□□□ -0.16
UPF3B-202ENST00000345865 WDR87Q6ZQQ6 2873 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 A0A1B0GTH9 108 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 TVP23AA6NH52 213 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 HCRTR2O43614 444 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 UPK3AO75631 287 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 RPP14O95059 124 aaKnown RBP14.02□□□□□ -0.16
UPF3B-202ENST00000345865 GPANK1O95872 356 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 TXNDC12O95881 172 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 EVI2BP34910 448 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 NR0B1P51843 470 aaKnown RBP14.02□□□□□ -0.16
UPF3B-202ENST00000345865 EPHA4P54764 986 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 RRAS2P62070 204 aaPredicted RBP14.02□□□□□ -0.16
UPF3B-202ENST00000345865 HSF2Q03933 536 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 LAT2Q9GZY6 243 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 ZNF281Q9Y2X9 895 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 PCDHGA9Q9Y5G4 932 aaKnown RBP14.02□□□□□ -0.16
UPF3B-202ENST00000345865 DMDP11532 3685 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 NUP210LQ5VU65 1888 aa14.02□□□□□ -0.16
UPF3B-202ENST00000345865 COL5A1P20908 1838 aaPredicted RBP14.02□□□□□ -0.17
UPF3B-202ENST00000345865 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 ZNF879B4DU55 563 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 FAM47E-STBD1D6RA91 191 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 SMLR1H3BR10 107 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 GPRIN2O60269 458 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 UBL3O95164 117 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 YES1P07947 543 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 MMP15P51511 669 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 ELAVL1Q15717 326 aaKnown RBP14.02□□□□□ -0.17
UPF3B-202ENST00000345865 NTRK2Q16620 822 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 C1orf189Q5VU69 101 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 SLC16A9Q7RTY1 509 aa14.02□□□□□ -0.17
UPF3B-202ENST00000345865 ASCC1Q8N9N2 400 aaKnown RBP14.02□□□□□ -0.17
UPF3B-202ENST00000345865 ANKRD61A6NGH8 418 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 KHNYNO15037 678 aaKnown RBP14.01□□□□□ -0.17
UPF3B-202ENST00000345865 TSPAN2O60636 221 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 ABHD16AO95870 558 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 BCKDHBP21953 392 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 NSDHLQ15738 373 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 HES5Q5TA89 166 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 LIPNQ5VXI9 398 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 OTPQ5XKR4 325 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 SIAH3Q8IW03 269 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 CMTM4Q8IZR5 234 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 OIT3Q8WWZ8 545 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 MVB12AQ96EY5 273 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 WDR76Q9H967 626 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 FRRS1LQ9P0K9 344 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 GRHPRQ9UBQ7 328 aa14.01□□□□□ -0.17
UPF3B-202ENST00000345865 TRAV6A0A075B6T7 132 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms