RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RRM2BQ7LG56 351 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC7A13Q8TCU3 470 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 POP5Q969H6 163 aaKnown RBP14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 BPIFA2Q96DR5 249 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 ZNF347Q96SE7 839 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 MAGIXQ9H6Y5 334 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC24A3Q9HC58 644 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC7A8Q9UHI5 535 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 POMPQ9Y244 141 aa14.06□□□□□ -0.16
CCDC28A-201ENST00000332797 CENPEQ02224 2701 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 CELSR2Q9HCU4 2923 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 TRBV4-1A0A0J9YWV2 114 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 LOC102725191A0A1B0GVB3 256 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 BLOC1S5-TXNDC5H3BN57 136 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 EBAG9O00559 213 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 RNF13O43567 381 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 TRAF3IP2O43734 574 aaPredicted RBP14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 GADD45GO95257 159 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 SAGP10523 405 aaPredicted RBP14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 PCYT1AP49585 367 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 SMIM11AP58511 58 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 PRKCDQ05655 676 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 CHRNB3Q05901 458 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 TSC22D1Q15714 1073 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 ANKRD34AQ69YU3 496 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 PIWIL3Q7Z3Z3 882 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 SPATA24Q86W54 205 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 RNF113BQ8IZP6 322 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 DHRS1Q96LJ7 313 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 TAS2R5Q9NYW4 299 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 UPB1Q9UBR1 384 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 NOX1Q9Y5S8 564 aa14.05□□□□□ -0.16
CCDC28A-201ENST00000332797 SH3D21A4FU49 640 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 AQP12BA6NM10 295 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 AKAP8O43823 692 aaKnown RBP14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 LYZL6O75951 148 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 CNOT4O95628 575 aaKnown RBP14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 MAKP20794 623 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 RRM2P31350 389 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 MAGEA2P43356 314 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 GPR4P46093 362 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 FAPQ12884 760 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 P2RY6Q15077 328 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 TSPO2Q5TGU0 170 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 PXKQ7Z7A4 578 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 AQP12AQ8IXF9 295 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 CDK20Q8IZL9 346 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 MED18Q9BUE0 208 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 SLCO5A1Q9H2Y9 848 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC7A10Q9NS82 523 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 ASB6Q9NWX5 421 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 MED29Q9NX70 200 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 MALT1Q9UDY8 824 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 KCNN3Q9UGI6 736 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 NDRG3Q9UGV2 375 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 AURKCQ9UQB9 309 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 RCE1Q9Y256 329 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 GPR52Q9Y2T5 361 aa14.04□□□□□ -0.16
CCDC28A-201ENST00000332797 DHRS12A0PJE2 317 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 HTR3EA5X5Y0 456 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 EFCAB9A8MZ26 197 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 KRT33AO76009 404 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 PSMB1P20618 241 aaKnown RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 IGHV1-2P23083 117 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 IL32P24001 234 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ERFP50548 548 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 RPL18Q07020 188 aaKnown RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 LGALS3BPQ08380 585 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ZP4Q12836 540 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ITGADQ13349 1161 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 SEC23BQ15437 767 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 SFRP5Q5T4F7 317 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 BHLHA15Q7RTS1 189 aaPredicted RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ADGRG5Q8IZF4 528 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ANKK1Q8NFD2 765 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 FAM222BQ8WU58 562 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 LIPHQ8WWY8 451 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 KISS1RQ969F8 398 aaPredicted RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 FAM46AQ96IP4 442 aaKnown RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 WFIKKN1Q96NZ8 548 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 EMC6Q9BV81 110 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 ACTR6Q9GZN1 396 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 MMADHCQ9H3L0 296 aaPredicted RBP14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 TMEM5Q9Y2B1 443 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 UNC79Q9P2D8 2635 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 FREM1Q5H8C1 2179 aa14.03□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC43A1O75387 559 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 ZNF432O94892 652 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 RAP2AP10114 183 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 IFNGR1P15260 489 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 COX5AP20674 150 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 DNAJA1P31689 397 aaKnown RBP14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 AQP2P41181 271 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 C9orf135Q5VTT2 229 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 CARD17Q5XLA6 110 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 SLC35D2Q76EJ3 337 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 POMGNT2Q8NAT1 580 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 STEAP2Q8NFT2 490 aa14.02□□□□□ -0.16
CCDC28A-201ENST00000332797 OR4K5Q8NGD3 323 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms