RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PGAP1Q75T13 922 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SERTM2A0A1B0GWG4 89 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 TMEM72A0PK05 275 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 H3BQ06 376 aaPredicted RBP7.36□□□□□ -1.23
CIITA-201ENST00000324288 PTGER4P35408 488 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 PGGHGQ32M88 737 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 VRK2Q86Y07 508 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 ACPTQ9BZG2 426 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SLC6A17Q9H1V8 727 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 CUTCQ9NTM9 273 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 FBXO7Q9Y3I1 522 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 PCDHA9Q9Y5H5 950 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SPG11Q96JI7 2443 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 GABRR3A8MPY1 467 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SLC16A7O60669 478 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 TBPL2Q6SJ96 375 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 Q6ZNX1 250 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 RELL2Q8NC24 303 aaPredicted RBP7.36□□□□□ -1.23
CIITA-201ENST00000324288 OR52R1Q8NGF1 315 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 C12orf42Q96LP6 360 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SEMA4CQ9C0C4 833 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 OR52A5Q9H2C5 316 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 NOX4Q9NPH5 578 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 SAGE1Q9NXZ1 904 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 ZNF281Q9Y2X9 895 aa7.36□□□□□ -1.23
CIITA-201ENST00000324288 ADRB1P08588 477 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 DSC1Q08554 894 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 IKZF1Q13422 519 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NR0B2Q15466 257 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 OR8B8Q15620 311 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 C11orf91Q3C1V1 193 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZMAT1Q5H9K5 638 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 DBX2Q6ZNG2 339 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TXLNGYQ9BZA5 131 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 SDR39U1Q9NRG7 319 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 AKAP12Q02952 1782 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MYADML2A6NDP7 307 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 GPR37L1O60883 481 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 QDPRP09417 244 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MPGP29372 298 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 HMGCLP35914 325 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RAD52P43351 418 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MEPCEQ7L2J0 689 aaKnown RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 RDH10Q8IZV5 341 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 KCNRGQ8N5I3 272 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 HSD17B11Q8NBQ5 300 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 OR7D2Q96RA2 312 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 XYLT2Q9H1B5 865 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TRAV34A0A0B4J273 112 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 SOX9P48436 509 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TNFRSF17Q02223 184 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RGNQ15493 299 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 PROX2Q3B8N5 592 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RHEBL1Q8TAI7 183 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NIPSNAP3BQ9BS92 247 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MED1Q15648 1581 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 C3P01024 1663 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MRC1P22897 1456 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TCRBV3S1A0A5B6 114 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 CLEC3BP05452 202 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 SDC1P18827 310 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF280AP59817 542 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 CAMK2DQ13557 499 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RBMXL3Q8N7X1 1067 aaKnown RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 SFT2D1Q8WV19 159 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZBED3Q96IU2 234 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF300Q96RE9 604 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 NUP98P52948 1817 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 C7orf72A4D263 438 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF33AQ06730 810 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 OR7E24Q6IFN5 339 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 C1orf87Q8N0U7 546 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 CA5BP1Q8WTZ4 195 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 POM121Q96HA1 1249 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 PRR14Q9BWN1 585 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF443Q9Y2A4 671 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 N4BP2Q86UW6 1770 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 SNAI1O95863 264 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 HBE1P02100 147 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MAT1AQ00266 395 aaKnown RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 GLO1Q04760 184 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 GPR18Q14330 331 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 CPZQ66K79 652 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ZNF417Q8TAU3 575 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 FUBP1Q96AE4 644 aaKnown RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 VN1R3Q9BXE9 311 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TMEM59Q9BXS4 323 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 MED9Q9NWA0 146 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 NPIPB15A6NHN6 443 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 D6RAR5 112 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TRAPPC2LH3BP13 241 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 PHOX2AO14813 284 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TRAF3IP2O43734 574 aaPredicted RBP7.35□□□□□ -1.23
CIITA-201ENST00000324288 RRASP10301 218 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 HOXA9P31269 272 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 RABIFP47224 123 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 ESPNLQ6ZVH7 1005 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 SLC51BQ86UW2 128 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 STT3BQ8TCJ2 826 aa7.35□□□□□ -1.23
CIITA-201ENST00000324288 TRIB3Q96RU7 358 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms