RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CEBPZOSA8MTT3 80 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 AIPO00170 330 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 IGHG1P01857 330 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 JMJD7P0C870 316 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 CTSAP10619 480 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 IRF2P14316 349 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 MSMO1Q15800 293 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 SAXO2Q658L1 398 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF705AQ6ZN79 300 aaPredicted RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 MFSD9Q8NBP5 474 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 KCNG3Q8TAE7 436 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 IL1F10Q8WWZ1 152 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 DCLRE1CQ96SD1 692 aaKnown RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 NMNAT3Q96T66 252 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 LOC102725191A0A1B0GVB3 256 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 ANKRD30BLA7E2S9 258 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 GABARAPH6UMI1 98 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 CPEP16870 476 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 SYT14P1Q58G82 188 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 HIST2H3AQ71DI3 136 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 SLC35D2Q76EJ3 337 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 OR13C9Q8NGT0 318 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 FAM3DQ96BQ1 224 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 YIPF6Q96EC8 236 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF578Q96N58 590 aaPredicted RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 OR11A1Q9GZK7 315 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 RAB9BQ9NP90 201 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 EXOSC3Q9NQT5 275 aaKnown RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 A0A0A6YYJ9 748 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 MMP11P24347 488 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 TAGLN2P37802 199 aaKnown RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 LTB4RQ15722 352 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 CST9LP1Q5W188 147 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 FAM57BQ71RH2 274 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 NLRC3Q7RTR2 1065 aa16.08■□□□□ 0.16
SYNPO-201ENST00000307662 AHDC1Q5TGY3 1603 aaPredicted RBP16.08■□□□□ 0.16
SYNPO-201ENST00000307662 SPI1P17947 270 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 HNRNPA2B1P22626 353 aaKnown RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 POU3F1Q03052 451 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 KIAA0895LQ68EN5 471 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 OVCH1Q7RTY7 1134 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 OR5K2Q8NHB8 316 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 SLC22A11Q9NSA0 550 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 TMEM221A6NGB7 291 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 KIAA0141Q14154 515 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 SFRP5Q5T4F7 317 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 DHRS4L2Q6PKH6 230 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 SLC39A5Q6ZMH5 540 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 RSC1A1Q92681 617 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF629Q9UEG4 869 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 FBXL4Q9UKA2 621 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 PKD1L3Q7Z443 1732 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 A0A087WZY1 265 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 TCRBV5S2A0A599 114 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 BHLHE40O14503 412 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 NSA2O95478 260 aaKnown RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 HOXA9P31269 272 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 DUSP3P51452 185 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF266Q14584 549 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 TMEM207Q6UWW9 146 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF808Q8N4W9 903 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 PATZ1Q9HBE1 687 aaKnown RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 MRPS28Q9Y2Q9 187 aaKnown RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 H7C1C5 153 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 HOXD9P28356 352 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 P2RY2P41231 377 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 LCN6P62502 163 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 TNFRSF17Q02223 184 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 HNRNPA1L2Q32P51 320 aaKnown RBP16.07■□□□□ 0.16
SYNPO-201ENST00000307662 KLHDC8BQ8IXV7 354 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 SLC25A32Q9H2D1 315 aa16.07■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF195O14628 629 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 ADAMTS4O75173 837 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 GNB3P16520 340 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SRPXP78539 464 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 IAH1Q2TAA2 248 aaPredicted RBP16.06■□□□□ 0.16
SYNPO-201ENST00000307662 CD300LGQ6UXG3 332 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 DPY19L2P2Q6ZN68 376 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 ADGRE4PQ86SQ3 457 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 MKXQ8IYA7 352 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SLC43A2Q8N370 569 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 DHRS9Q9BPW9 319 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 ZNF28P17035 718 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 APLNRP35414 380 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 CHTF18Q8WVB6 975 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 GCDHQ92947 438 aaPredicted RBP16.06■□□□□ 0.16
SYNPO-201ENST00000307662 TIMM29Q9BSF4 260 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 ERVMER34-1Q9H9K5 563 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 IMPA2O14732 288 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 TGFBR1P36897 503 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 ZBTB44Q8NCP5 570 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 OR51S1Q8NGJ8 323 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 PPP1R35Q8TAP8 253 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 C2CD4CQ8TF44 421 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 UPRTQ96BW1 309 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 SELENOIQ9C0D9 397 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 UBQLN3Q9H347 655 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 LILRB3O75022 631 aa16.06■□□□□ 0.16
SYNPO-201ENST00000307662 CLDN20P56880 219 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms