RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CCSO14618 274 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 HTR3BO95264 441 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 CLLU1Q5K131 121 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 SFTPA1Q8IWL2 248 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 ZNF565Q8N9K5 539 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 OR5K2Q8NHB8 316 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 ELP5Q8TE02 316 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 LRRC3BQ96PB8 259 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 PRRT1Q99946 306 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 RPP25Q9BUL9 199 aaKnown RBP14.19□□□□□ -0.14
SHH-201ENST00000297261 AUNIPQ9H7T9 357 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 NTNG1Q9Y2I2 539 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 C5orf67F2Z3F1 127 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 GIPP09681 153 aaPredicted RBP14.19□□□□□ -0.14
SHH-201ENST00000297261 HYAL1Q12794 435 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 SLC9A3R2Q15599 337 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 AADACL4Q5VUY2 407 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 SLC35F3Q8IY50 421 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 C10orf111Q8N326 155 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 ZNF511Q8NB15 262 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 TOMM40LQ969M1 308 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 MMABQ96EY8 250 aaPredicted RBP14.19□□□□□ -0.14
SHH-201ENST00000297261 PRTFDC1Q9NRG1 225 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 SEMA4GQ9NTN9 838 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 PRSS38A1L453 326 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 KCNJ13O60928 360 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 FPR3P25089 353 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 LIM2P55344 173 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 ARHGAP19Q14CB8 494 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 DCST2Q5T1A1 773 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 AWAT2Q6E213 333 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 STEAP1BQ6NZ63 245 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 Q6ZSR6 202 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 GDF7Q7Z4P5 450 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 RLN3Q8WXF3 142 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 SHDQ96IW2 340 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 AMDHD1Q96NU7 426 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 TEAD3Q99594 435 aa14.19□□□□□ -0.14
SHH-201ENST00000297261 RAB19A4D1S5 217 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 MAN2B1O00754 1011 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 AIFM1O95831 613 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 THEGLP0DJG4 465 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 NME2P22392 152 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SLC6A12P48065 614 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 HCCSP53701 268 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 CSNK2A1P68400 391 aaPredicted RBP14.18□□□□□ -0.14
SHH-201ENST00000297261 ADAM5Q6NVV9 412 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 CSNK2A3Q8NEV1 391 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 JSRP1Q96MG2 331 aaPredicted RBP14.18□□□□□ -0.14
SHH-201ENST00000297261 NMNAT3Q96T66 252 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 CDC6Q99741 560 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ATF6BQ99941 703 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SULT4A1Q9BR01 284 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 C1QTNF6Q9BXI9 259 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SCN5AQ14524 2016 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 PLPP1O14494 284 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SBK2P0C263 348 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 OR2T7P0C7T2 308 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ZNF888P0CJ79 500 aaPredicted RBP14.18□□□□□ -0.14
SHH-201ENST00000297261 SLC16A11Q8NCK7 471 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 OR6N1Q8NGY5 312 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 OR2T27Q8NH04 317 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 WDFY2Q96P53 400 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ZNF850A8MQ14 1090 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 F13BP05160 661 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 RD3LP0DJH9 198 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 GRM7Q14831 915 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 RPE65Q16518 533 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 OR7E24Q6IFN5 339 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ZNF679Q8IYX0 411 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SFXN5Q8TD22 340 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ORAI1Q96D31 301 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 TIMM29Q9BSF4 260 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 PLA2G2FQ9BZM2 168 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 SLC5A7Q9GZV3 580 aa14.18□□□□□ -0.14
SHH-201ENST00000297261 ISG20L2Q9H9L3 353 aaKnown RBP14.18□□□□□ -0.14
SHH-201ENST00000297261 APOBEC3BQ9UH17 382 aaKnown RBP14.18□□□□□ -0.14
SHH-201ENST00000297261 TPPPO94811 219 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SOD1P00441 154 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SRMP19623 302 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 DPTQ07507 201 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 TDGQ13569 410 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 KIAA0040Q15053 153 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SNIP1Q8TAD8 396 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 HHIPQ96QV1 700 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 ST6GALNAC5Q9BVH7 336 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 PLEKHM1Q9Y4G2 1056 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 IFNGR1P15260 489 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 GNRHRP30968 328 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 CAV2P51636 162 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 NKX6-1P78426 367 aaPredicted RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 MRPS21P82921 87 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 RBM39Q14498 530 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 TMEM200AQ86VY9 491 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 LMAN1LQ9HAT1 526 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 C2orf74A8MZ97 194 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 HMGN4O00479 90 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 MAP2K6P52564 334 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 PRPS1P60891 318 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 RPS15AP62244 130 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms