RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 OR2T1O43869 369 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 IGKV3-15P01624 115 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 NQO1P15559 274 aaKnown RBP11.08□□□□□ -0.64
CD44-203ENST00000278386 PRKAR1BP31321 381 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 CEACAM16Q2WEN9 425 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 C3orf36Q3SXR2 165 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 ALG10BQ5I7T1 473 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 CARD17Q5XLA6 110 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 C5orf46Q6UWT4 87 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 C6orf89Q6UWU4 347 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 MYPOPQ86VE0 399 aaPredicted RBP11.08□□□□□ -0.64
CD44-203ENST00000278386 KRT73Q86Y46 540 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 PIK3C3Q8NEB9 887 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 SPATA5L1Q9BVQ7 753 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 PRR14Q9BWN1 585 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 BPESC1Q9GZL8 116 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 RAB1BQ9H0U4 201 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 C12orf10Q9HB07 376 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 CRLF2Q9HC73 371 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 GPR35Q9HC97 309 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 BCL2L10Q9HD36 194 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 DYNLRB1Q9NP97 96 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 B3GAT1Q9P2W7 334 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 SLC13A4Q9UKG4 626 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 STAB1Q9NY15 2570 aa11.08□□□□□ -0.64
CD44-203ENST00000278386 TRAV36DV7A0A075B6V5 113 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 IGHV2OR16-5A0A0B4J2B6 119 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 A0A1B0GWA3 101 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 SLC35F4A4IF30 521 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 VSTM5A8MXK1 200 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 RPL36A-HNRNPH2H7BZ11 118 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 M0R3G1 203 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 ZNF432O94892 652 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 IGLV1-44P01699 117 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 ARAFP10398 606 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 BMP2P12643 396 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 HOXB1P14653 301 aaPredicted RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 ETS2P15036 469 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 NPR2P20594 1047 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 HTR2AP28223 471 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 SLC18A1P54219 525 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 RGS8P57771 180 aaPredicted RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 SNTB2Q13425 540 aaKnown RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 EFNB3Q15768 340 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 SPATA21Q7Z572 469 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 MDP1Q86V88 176 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 UEVLDQ8IX04 471 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 SVOPLQ8N434 492 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 ZNF540Q8NDQ6 660 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 NUP37Q8NFH4 326 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 TAAR8Q969N4 342 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 MSI2Q96DH6 328 aaKnown RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 FOXN4Q96NZ1 517 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 OR2M2Q96R28 347 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 PLK3Q9H4B4 646 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 ZNF442Q9H7R0 627 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 TCF7L2Q9NQB0 619 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 KLHL14Q9P2G3 628 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 TESQ9UGI8 421 aaKnown RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 FBXO9Q9UK97 447 aaPredicted RBP11.07□□□□□ -0.64
CD44-203ENST00000278386 USP22Q9UPT9 525 aa11.07□□□□□ -0.64
CD44-203ENST00000278386 SH3PXD2BA1X283 911 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ZNF503-AS2A6NEH8 195 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ZNF99A8MXY4 864 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 TRAF3IP2O43734 574 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 SERPINI2O75830 405 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 CBR1P16152 277 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ZNF23P17027 643 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 HOXB9P17482 250 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 PPIBP23284 216 aaKnown RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 THBS4P35443 961 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ARR3P36575 388 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 CDK6Q00534 326 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 POU3F1Q03052 451 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 HGFACQ04756 655 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 SCARB2Q14108 478 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 DAG1Q14118 895 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 KRTAP24-1Q3LI83 254 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 FAM120AOSQ5T036 256 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 KRT80Q6KB66 452 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 REEP3Q6NUK4 255 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 DHRS4L2Q6PKH6 230 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 EPGNQ6UW88 154 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 H1FNTQ75WM6 255 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 TMEM123Q8N131 208 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 C10orf53Q8N6V4 93 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 FAM169BQ8N8A8 192 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 LSMEM1Q8N8F7 131 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ADPRHL1Q8NDY3 354 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ANKK1Q8NFD2 765 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 DNAJA4Q8WW22 397 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 TLCD1Q96CP7 247 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 SPDL1Q96EA4 605 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ZNF837Q96EG3 531 aaPredicted RBP11.06□□□□□ -0.64
CD44-203ENST00000278386 SLC47A1Q96FL8 570 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ANKRD27Q96NW4 1050 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 EPYCQ99645 322 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 ASPNQ9BXN1 380 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 TMBIM4Q9HC24 238 aa11.06□□□□□ -0.64
CD44-203ENST00000278386 B3GAT2Q9NPZ5 323 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms