RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 FAM27D1Q5T7N8 215 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 LRRTM4Q86VH4 590 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 C17orf82Q86X59 251 aaPredicted RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TRAPPC5Q8IUR0 188 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 OR10H4Q8NGA5 316 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 OR5K2Q8NHB8 316 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 ZDHHC1Q8WTX9 485 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PATE1Q8WXA2 126 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 GHSRQ92847 366 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PMM1Q92871 262 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CD180Q99467 661 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SIDT1Q9NXL6 827 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TAC3Q9UHF0 121 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 ICAM5Q9UMF0 924 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 RP1P56715 2156 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CHD8Q9HCK8 2581 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PRR19A6NJB7 356 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CDC42EP2O14613 210 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PIP5K1CO60331 668 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 GMDSO60547 372 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SELENOFO60613 162 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 H2AFB1P0C5Y9 115 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CALCBP10092 127 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SNRPBP14678 240 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 RPS4Y1P22090 263 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 AHRP35869 848 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF136P52737 540 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 DLX5P56178 289 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PSMA6P60900 246 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CSNK1G2P78368 415 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SLC3A1Q07837 685 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 DBPQ10586 325 aaPredicted RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SLC9A5Q14940 896 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 RPL22L1Q6P5R6 122 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 FAM199XQ6PEV8 388 aaPredicted RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TMUB2Q71RG4 321 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TMPRSS7Q7RTY8 843 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CMTM4Q8IZR5 234 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 C17orf47Q8NEP4 570 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 BEST4Q8NFU0 473 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 OR5M9Q8NGP3 310 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TMEM255BQ8WV15 326 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 NAT6Q93015 286 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 CCDC74AQ96AQ1 378 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 GIMAP5Q96F15 307 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 MRPL48Q96GC5 212 aaKnown RBP9.45□□□□□ -0.9
UPF3B-201ENST00000276201 C4orf36Q96KX1 117 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 ZFP3Q96NJ6 502 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 IL17FQ96PD4 163 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 SLC25A32Q9H2D1 315 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 TBC1D29Q9UFV1 150 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 PRELID3BQ9Y3B1 194 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF175Q9Y473 711 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 KCNE3Q9Y6H6 103 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 AKAP13Q12802 2813 aa9.45□□□□□ -0.9
UPF3B-201ENST00000276201 NUP210LQ5VU65 1888 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ARPC4-TTLL3A0A0A6YYG9 625 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 FAM221BA6H8Z2 402 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 A6NCN8 305 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF879B4DU55 563 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 D6RAR5 112 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 F3P13726 295 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 HOXB3P14651 431 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 BMP7P18075 431 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 DPP4P27487 766 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 SSR2P43308 183 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 EEF1A1P68104 462 aaKnown RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 DUSP8Q13202 625 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 GK2Q14410 553 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 HES3Q5TGS1 186 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 SLC48A1Q6P1K1 146 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF793Q6ZN11 406 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 FRRS1Q6ZNA5 592 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 OLIG3Q7RTU3 272 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 RANBP3LQ86VV4 465 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 CDH26Q8IXH8 852 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 POMGNT2Q8NAT1 580 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 NUP43Q8NFH3 380 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 OR4D9Q8NGE8 314 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 SMPDL3BQ92485 455 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 FBXW5Q969U6 566 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 CNRIP1Q96F85 164 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 C16orf58Q96GQ5 468 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF681Q96N22 645 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 TIMM29Q9BSF4 260 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 AICDAQ9GZX7 198 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 NOX3Q9HBY0 568 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 PRDM9Q9NQV7 894 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 COQ3Q9NZJ6 369 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 MED11Q9P086 117 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ASF1AQ9Y294 204 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 HRH3Q9Y5N1 445 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ETV7Q9Y603 341 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 COL27A1Q8IZC6 1860 aaPredicted RBP9.44□□□□□ -0.9
UPF3B-201ENST00000276201 A0A1B0GVC2 190 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 A6NIN4 97 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 FAM183AA6NL82 134 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 PTP4A3O75365 173 aa9.44□□□□□ -0.9
UPF3B-201ENST00000276201 ZIC2O95409 532 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms