RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CROCCP3Q8IVE0 287 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 LGI3Q8N145 548 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 CFAP52Q8N1V2 620 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 JAGN1Q8N5M9 183 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PARP16Q8N5Y8 322 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PLA2G15Q8NCC3 412 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 NPEPL1Q8NDH3 523 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 TMEM161BQ8NDZ6 487 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 NOXO1Q8NFA2 376 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR2AK2Q8NG84 335 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR5L1Q8NGL2 311 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR2Y1Q8NGV0 311 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR6K3Q8NGY3 331 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR2T11Q8NH01 316 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OR5AK3PQ8NH89 298 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 SPATA22Q8NHS9 363 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 C16orf78Q8WTQ4 265 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 ADAMTS14Q8WXS8 1223 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 RORBQ92753 470 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 RPEQ96AT9 228 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 APH1AQ96BI3 265 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 OTULINQ96BN8 352 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PYCR2Q96C36 320 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 TLCD1Q96CP7 247 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 RSPRY1Q96DX4 576 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 SMIM12Q96EX1 92 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 SCRN2Q96FV2 425 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 WDYHV1Q96HA8 205 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 TMEM80Q96HE8 168 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 SFRP2Q96HF1 295 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PRMT6Q96LA8 375 aaPredicted RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 AGAP4Q96P64 663 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 TSSK2Q96PF2 358 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 DEFB118Q96PH6 123 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 SDHCQ99643 169 aaPredicted RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 C16orf70Q9BSU1 422 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 RHOJQ9H4E5 214 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 KLHL31Q9H511 634 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 ANKRD19PQ9H560 264 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 GAREM1Q9H706 876 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 EBF2Q9HAK2 575 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 TMBIM4Q9HC24 238 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 IL23AQ9NPF7 189 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PHPT1Q9NRX4 125 aaPredicted RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 SLC38A7Q9NVC3 462 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 GPATCH2LQ9NWQ4 482 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 IMPAD1Q9NX62 359 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 C1RLQ9NZP8 487 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 GSKIPQ9P0R6 139 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 DKKL1Q9UK85 242 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 CDC42EP3Q9UKI2 254 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 NPIPA1Q9UND3 350 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 FARSAQ9Y285 508 aaKnown RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 ZBTB32Q9Y2Y4 487 aaPredicted RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 TMED7Q9Y3B3 224 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 MRPS18CQ9Y3D5 142 aaKnown RBP2.69□□□□□ -1.98
VIM-210ENST00000637053 ALG5Q9Y673 324 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 AK9Q5TCS8 1911 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 PNPLA6Q8IY17 1366 aa2.69□□□□□ -1.98
VIM-210ENST00000637053 AQRO60306 1485 aaKnown RBP eCLIP2.69□□□□□ -1.984e-8■■■■■ 28.9
VIM-210ENST00000637053 ADGRA2Q96PE1 1338 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 TRBV9A0A0B4J1U6 114 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.68□□□□□ -1.98
VIM-210ENST00000637053 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.68□□□□□ -1.98
VIM-210ENST00000637053 A0A1W2PRF3 423 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 A0A1W2PRM7 423 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 C9orf170A2RU37 121 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 MYMKA6NI61 221 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 TMEM200CA6NKL6 621 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 OR11H12B2RN74 326 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 TMEM150CB9EJG8 249 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 F5H768 121 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 TMX2-CTNND1H3BSU7 103 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 K7EP13 123 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 DCTN6O00399 190 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 KPNA4O00629 521 aaPredicted RBP2.68□□□□□ -1.98
VIM-210ENST00000637053 BHLHE40O14503 412 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 CDIPTO14735 213 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 UBDO15205 165 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 SLC31A1O15431 190 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 DLEU1O43261 78 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 HPGDSO60760 199 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 FAM20BO75063 409 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 RP2O75695 350 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 SULT1C4O75897 302 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 OR7A10O76100 309 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 SOX30O94993 753 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 GJB5O95377 273 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 HPRP00739 348 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 IFNA10P01566 189 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 IFNA4P05014 189 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 ALDOBP05062 364 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 HIST1H2AGP0C0S8 130 aaPredicted RBP2.68□□□□□ -1.98
VIM-210ENST00000637053 OR8U9P0C7N5 309 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 ETFAP13804 333 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 NR4A1P22736 598 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 PRDX3P30048 256 aaKnown RBP2.68□□□□□ -1.98
VIM-210ENST00000637053 CA5AP35218 305 aa2.68□□□□□ -1.98
VIM-210ENST00000637053 PMELP40967 661 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms