RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC15A1P46059 708 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 STARP49675 285 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 MEOX1P50221 254 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 SGCBQ16585 318 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 MS4A18Q3C1V0 323 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 NADK2Q4G0N4 442 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 XAF1Q6GPH4 301 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 CXXC5Q7LFL8 322 aaKnown RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 SHFQ7M4L6 423 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 SPACA3Q8IXA5 215 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 SLC37A3Q8NCC5 494 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 SNIP1Q8TAD8 396 aaKnown RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 Q96MT0 163 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 DCBLD2Q96PD2 775 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 TSPAN32Q96QS1 320 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 SIGLEC11Q96RL6 698 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 GPX7Q96SL4 187 aaPredicted RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 TTTY12Q9BZ98 90 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 BOKQ9UMX3 212 aaPredicted RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 BOD1L1Q8NFC6 3051 aa18.07■□□□□ 0.48
CLN3-250ENST00000636839 SPENQ96T58 3664 aaKnown RBP18.07■□□□□ 0.48
CLN3-250ENST00000636839 RNF13O43567 381 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 RGS10O43665 173 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 CDKN2AP42771 156 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 MAGEA5P43359 124 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 RPL5P46777 297 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 TNFSF10P50591 281 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 CSNK2BP67870 215 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 TUBA4AP68366 448 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 EMX1Q04741 257 aaPredicted RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 ZNF766Q5HY98 468 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 WDFY1Q8IWB7 410 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 TMEM99Q8N816 258 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 FAM98AQ8NCA5 519 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 OR9Q1Q8NGQ5 310 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 ASPNQ9BXN1 380 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 PRRG3Q9BZD7 231 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 ZNF703Q9H7S9 590 aaPredicted RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 MRPL39Q9NYK5 338 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 RIIAD1A6NNX1 92 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 H7C1C5 153 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 PCMT1P22061 227 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 CLDN20P56880 219 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 LCN6P62502 163 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-250ENST00000636839 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.06■□□□□ 0.48
CLN3-250ENST00000636839 FOXB2Q5VYV0 432 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 C5orf46Q6UWT4 87 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 LSM14AQ8ND56 463 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 ZNRF4Q8WWF5 429 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 PIGQQ9BRB3 760 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 OR51V1Q9H2C8 321 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 ZNF346Q9UL40 294 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 BAIAP2Q9UQB8 552 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 SLC6A5Q9Y345 797 aa18.06■□□□□ 0.48
CLN3-250ENST00000636839 URB1O60287 2271 aaKnown RBP18.06■□□□□ 0.48
CLN3-250ENST00000636839 OR6C68A6NDL8 312 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 ARPC3O15145 178 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 PRODHO43272 600 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 RAMP1O60894 148 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 CEACAM4O75871 244 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 FADS2O95864 444 aaKnown RBP18.05■□□□□ 0.48
CLN3-250ENST00000636839 CDK1P06493 297 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 CD46P15529 392 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 DIO1P49895 249 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 MAP2K6P52564 334 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 NR1H2P55055 460 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 CDH11P55287 796 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 OR2B6P58173 313 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 MEDAGQ5VYS4 303 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 ARHGAP11AQ6P4F7 1023 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 NPEPL1Q8NDH3 523 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 OR51L1Q8NGJ5 315 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 IPCEF1Q8WWN9 437 aaPredicted RBP18.05■□□□□ 0.48
CLN3-250ENST00000636839 DDOQ99489 341 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 RNF32Q9H0A6 362 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 SSUH2Q9Y2M2 353 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 COMMD3-BMI1R4GMX3 469 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 ALDH3B2P48448 385 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 PMP22Q01453 160 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 KLHL12Q53G59 568 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 RNFT1Q5M7Z0 435 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 CCDC81Q6ZN84 652 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 H1FNTQ75WM6 255 aaPredicted RBP18.05■□□□□ 0.48
CLN3-250ENST00000636839 TMEM251Q8N6I4 163 aa18.05■□□□□ 0.48
CLN3-250ENST00000636839 KLF13Q9Y2Y9 288 aaPredicted RBP18.05■□□□□ 0.48
CLN3-250ENST00000636839 RPL36Q9Y3U8 105 aaKnown RBP18.05■□□□□ 0.48
CLN3-250ENST00000636839 A0A0J9YW62 118 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 PRR23D1E9PI22 279 aaPredicted RBP18.04■□□□□ 0.48
CLN3-250ENST00000636839 OR6A2O95222 327 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 PRR23D2P0DMB1 279 aaPredicted RBP18.04■□□□□ 0.48
CLN3-250ENST00000636839 ZNF3P17036 446 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 PLGLB1Q02325 96 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 TLE3Q04726 772 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 DOC2BQ14184 412 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 ACKR1Q16570 336 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 MESTQ5EB52 335 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 NXNL2Q5VZ03 156 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 NIPAL3Q6P499 406 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms