RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZCCHC24Q8N2G6 241 aaKnown RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 MAL2Q969L2 176 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 ZNF837Q96EG3 531 aaPredicted RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 SOX7Q9BT81 388 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 KATNB1Q9BVA0 655 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 RSPO3Q9BXY4 272 aaPredicted RBP14.03□□□□□ -0.16
CLN3-246ENST00000636228 OBP2BQ9NPH6 170 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 CALML5Q9NZT1 146 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 KCNS2Q9ULS6 477 aa14.03□□□□□ -0.16
CLN3-246ENST00000636228 ARPC4-TTLL3A0A0A6YYG9 625 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 A0A0G2JPF8 293 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 LRP5LA4QPB2 252 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 ZNF503-AS2A6NEH8 195 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 HNRNPCL2B2RXH8 293 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 HNRNPCL3B7ZW38 293 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 B9A039 149 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 HNRNPCL1O60812 293 aaKnown RBP14.02□□□□□ -0.17
CLN3-246ENST00000636228 AHSA1O95433 338 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 TGFAP01135 160 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 ZCCHC18P0CG32 403 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 HNRNPCL4P0DMR1 293 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 IDO1P14902 403 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 SRD5A1P18405 259 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 C6orf10Q5SRN2 563 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 C1QTNF12Q5T7M4 302 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 MAVSQ7Z434 540 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 MFSD8Q8NHS3 518 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 STK35Q8TDR2 534 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 ITCHQ96J02 903 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 OR52B2Q96RD2 323 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 BPESC1Q9GZL8 116 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 CRNNQ9UBG3 495 aaPredicted RBP14.02□□□□□ -0.17
CLN3-246ENST00000636228 PLCE1Q9P212 2302 aa14.02□□□□□ -0.17
CLN3-246ENST00000636228 LOC390937A0A1W2PQ73 354 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 TMEM120BA0PK00 339 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 NDUFS8O00217 210 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 SEC14L2O76054 403 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 ZNF432O94892 652 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 ZNF43P17038 809 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 THBS4P35443 961 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 POLR2JP52435 117 aaKnown RBP14.01□□□□□ -0.17
CLN3-246ENST00000636228 SLC2A7Q6PXP3 512 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 MAGEE2Q8TD90 523 aaPredicted RBP14.01□□□□□ -0.17
CLN3-246ENST00000636228 TAAR8Q969N4 342 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 MAELQ96JY0 434 aaKnown RBP14.01□□□□□ -0.17
CLN3-246ENST00000636228 LINC00470Q9BZP3 86 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 PLK3Q9H4B4 646 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 RMND5AQ9H871 391 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 CACYBPQ9HB71 228 aaKnown RBP14.01□□□□□ -0.17
CLN3-246ENST00000636228 ZIM2Q9NZV7 527 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 IFT52Q9Y366 437 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 PCDHB14Q9Y5E9 798 aa14.01□□□□□ -0.17
CLN3-246ENST00000636228 A0A096LPI6 279 aa14□□□□□ -0.17
CLN3-246ENST00000636228 SH3PXD2BA1X283 911 aa14□□□□□ -0.17
CLN3-246ENST00000636228 TMEM247A6NEH6 219 aa14□□□□□ -0.17
CLN3-246ENST00000636228 OR6C65A6NJZ3 312 aa14□□□□□ -0.17
CLN3-246ENST00000636228 hCG_2039718K7EN88 272 aa14□□□□□ -0.17
CLN3-246ENST00000636228 IGLV1-44P01699 117 aa14□□□□□ -0.17
CLN3-246ENST00000636228 CBR1P16152 277 aa14□□□□□ -0.17
CLN3-246ENST00000636228 GTF2E2P29084 291 aaKnown RBP14□□□□□ -0.17
CLN3-246ENST00000636228 IDH3GP51553 393 aaPredicted RBP14□□□□□ -0.17
CLN3-246ENST00000636228 IL1RL1Q01638 556 aa14□□□□□ -0.17
CLN3-246ENST00000636228 NPRL3Q12980 569 aa14□□□□□ -0.17
CLN3-246ENST00000636228 C1DQ13901 141 aaKnown RBP14□□□□□ -0.17
CLN3-246ENST00000636228 RGNQ15493 299 aa14□□□□□ -0.17
CLN3-246ENST00000636228 EFNB3Q15768 340 aa14□□□□□ -0.17
CLN3-246ENST00000636228 PHYHD1Q5SRE7 291 aa14□□□□□ -0.17
CLN3-246ENST00000636228 CARD17Q5XLA6 110 aa14□□□□□ -0.17
CLN3-246ENST00000636228 COMTD1Q86VU5 262 aa14□□□□□ -0.17
CLN3-246ENST00000636228 SVOPLQ8N434 492 aa14□□□□□ -0.17
CLN3-246ENST00000636228 GTF2H4Q92759 462 aa14□□□□□ -0.17
CLN3-246ENST00000636228 C19orf24Q9BVV8 132 aa14□□□□□ -0.17
CLN3-246ENST00000636228 PAIP1Q9H074 479 aaKnown RBP14□□□□□ -0.17
CLN3-246ENST00000636228 ARMC7Q9H6L4 198 aa14□□□□□ -0.17
CLN3-246ENST00000636228 CRLF2Q9HC73 371 aa14□□□□□ -0.17
CLN3-246ENST00000636228 GPR35Q9HC97 309 aa14□□□□□ -0.17
CLN3-246ENST00000636228 SDR39U1Q9NRG7 319 aaPredicted RBP14□□□□□ -0.17
CLN3-246ENST00000636228 B3GAT1Q9P2W7 334 aa14□□□□□ -0.17
CLN3-246ENST00000636228 RPS6KB2Q9UBS0 482 aa14□□□□□ -0.17
CLN3-246ENST00000636228 TMEM129A0AVI4 362 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 M0R082 166 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 CLIC1O00299 241 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 UBDO15205 165 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 SLC43A1O75387 559 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 STAMBPO95630 424 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 IGKV3-15P01624 115 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 ZNF23P17027 643 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 GRPRP30550 384 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 IL2RGP31785 369 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 CAPZA2P47755 286 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 ZSWIM7Q19AV6 140 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 CEACAM16Q2WEN9 425 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 SPATA21Q7Z572 469 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 MDP1Q86V88 176 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 GPR137CQ8N3F9 429 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 OR4F15Q8NGB8 312 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 ZNF417Q8TAU3 575 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 OXGR1Q96P68 337 aa13.99□□□□□ -0.17
CLN3-246ENST00000636228 ZNF587Q96SQ5 575 aaPredicted RBP13.99□□□□□ -0.17
CLN3-246ENST00000636228 DOK1Q99704 481 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms