RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 H1FNTQ75WM6 255 aaPredicted RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 ZNF100Q8IYN0 542 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 ZNF610Q8N9Z0 462 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 PFN4Q8NHR9 129 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 POP5Q969H6 163 aaKnown RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 MOGAT1Q96PD6 335 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 SF3B5Q9BWJ5 86 aaKnown RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 CADM1Q9BY67 442 aaKnown RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 FANCFQ9NPI8 374 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 NANSQ9NR45 359 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 GALNT8Q9NY28 637 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 JKAMPQ9P055 326 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 SEC14L4Q9UDX3 406 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 B3GALT5Q9Y2C3 310 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 CELSR1Q9NYQ6 3014 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 A8MXE2 369 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 LRRN3E7EW58 273 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 OR6A2O95222 327 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 CGAP01215 116 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 MT-ND1P03886 318 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 SEMG1P04279 462 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 HIST1H2ABP04908 130 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 SPIBQ01892 262 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 C1DQ13901 141 aaKnown RBP16.05■□□□□ 0.16
CLN3-239ENST00000628023 SLC17A1Q14916 467 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 ZNF74Q16587 644 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 FBXL19-AS1Q494R0 122 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 FAM98BQ52LJ0 330 aaKnown RBP16.05■□□□□ 0.16
CLN3-239ENST00000628023 CASP12Q6UXS9 341 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 SPNS3Q6ZMD2 512 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 HIST3H2AQ7L7L0 130 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 RRM2BQ7LG56 351 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.05■□□□□ 0.16
CLN3-239ENST00000628023 TMEM200AQ86VY9 491 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 ZDHHC21Q8IVQ6 265 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 SCAIQ8N9R8 606 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 OR9K2Q8NGE7 335 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 HIST1H2ACQ93077 130 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 SGTBQ96EQ0 304 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 C7orf34Q96L11 122 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 PIP5K1AQ99755 562 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 LRMDAQ9H2I8 198 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 FKRPQ9H9S5 495 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 NMNAT1Q9HAN9 279 aaPredicted RBP16.05■□□□□ 0.16
CLN3-239ENST00000628023 PLSCR4Q9NRQ2 329 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 MAN2C1Q9NTJ4 1040 aa16.05■□□□□ 0.16
CLN3-239ENST00000628023 HIVEP1P15822 2718 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 SPG11Q96JI7 2443 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 C2CD3Q4AC94 2353 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 TCRBV5S2A0A599 114 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 PIP5K1CO60331 668 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 MRPL33O75394 65 aaKnown RBP16.04■□□□□ 0.16
CLN3-239ENST00000628023 PRSS23O95084 383 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 POU2F1P14859 743 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 ZNF43P17038 809 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 P2RY4P51582 365 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 CHRNB3Q05901 458 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 LTBQ06643 244 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 PGM2L1Q6PCE3 622 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 ZNF474Q6S9Z5 364 aaPredicted RBP16.04■□□□□ 0.16
CLN3-239ENST00000628023 TFAP2EQ6VUC0 442 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 NANOGNBQ7Z5D8 188 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 TSEN54Q7Z6J9 526 aaKnown RBP16.04■□□□□ 0.16
CLN3-239ENST00000628023 SPATA24Q86W54 205 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 KIF18BQ86Y91 864 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 KDM8Q8N371 416 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 ADPRHL1Q8NDY3 354 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 PIK3C3Q8NEB9 887 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 OR5J2Q8NH18 312 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 APH1AQ96BI3 265 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 ZNF347Q96SE7 839 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 MAGIXQ9H6Y5 334 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 IL1RAPQ9NPH3 570 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 MEPEQ9NQ76 525 aaPredicted RBP16.04■□□□□ 0.16
CLN3-239ENST00000628023 MRPL39Q9NYK5 338 aaKnown RBP16.04■□□□□ 0.16
CLN3-239ENST00000628023 ZNF229Q9UJW7 825 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 TESMINQ9Y4I5 508 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 FLVCR1Q9Y5Y0 555 aa16.04■□□□□ 0.16
CLN3-239ENST00000628023 ACOT8O14734 319 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 FZD7O75084 574 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 ADORA3P0DMS8 318 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 IFI30P13284 250 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 AHCYP23526 432 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 OR3A2P47893 321 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 SMIM11AP58511 58 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 PUDPQ08623 228 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 TESK1Q15569 626 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 BEND4Q6ZU67 534 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 UEVLDQ8IX04 471 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 NRMQ8IXM6 262 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 UBE2J2Q8N2K1 259 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 ACOT11Q8WXI4 607 aaPredicted RBP16.03■□□□□ 0.16
CLN3-239ENST00000628023 OXGR1Q96P68 337 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 MMADHCQ9H3L0 296 aaPredicted RBP16.03■□□□□ 0.16
CLN3-239ENST00000628023 ANKRD19PQ9H560 264 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 C20orf141Q9NUB4 165 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 PARPBPQ9NWS1 579 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 ELOVL5Q9NYP7 299 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 AURKCQ9UQB9 309 aa16.03■□□□□ 0.16
CLN3-239ENST00000628023 POMPQ9Y244 141 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms