RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 STK11Q15831 433 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 MICBQ29980 383 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 SLC25A52Q3SY17 297 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TP53I3Q53FA7 332 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 COA6Q5JTJ3 125 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 FBXW9Q5XUX1 488 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TPGS2Q68CL5 300 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RAB12Q6IQ22 244 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 FAM71F2Q6NXP2 309 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 NLRP9Q7RTR0 991 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 MOB3BQ86TA1 216 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CCDC65Q8IXS2 484 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 UBALD2Q8IYN6 164 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CLEC4FQ8N1N0 589 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 LRRC43Q8N309 656 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 HDDC3Q8N4P3 179 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 OR4D9Q8NGE8 314 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 OR1N2Q8NGR9 330 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 OR2G3Q8NGZ4 309 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 OR5W2Q8NH69 310 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 ACTRT1Q8TDG2 376 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TM4SF19Q96DZ7 209 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 SH3YL1Q96HL8 342 aaPredicted RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 ITCHQ96J02 903 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 OR10C1Q96KK4 312 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RIT2Q99578 217 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TMEM117Q9H0C3 514 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 DNTTIP1Q9H147 329 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 DPH5Q9H2P9 285 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RNF167Q9H6Y7 350 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 POPDC2Q9HBU9 364 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 NOX3Q9HBY0 568 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TM9SF3Q9HD45 589 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 SLC17A5Q9NRA2 495 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 GLRX2Q9NS18 164 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 NINJ2Q9NZG7 142 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CLCF1Q9UBD9 225 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF629Q9UEG4 869 aaPredicted RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF222Q9UK12 451 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 AK6Q9Y3D8 172 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RPL36Q9Y3U8 105 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 IGSF9BQ9UPX0 1349 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 KDRP35968 1356 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 LOC110117498-PIK3R3F6TDL0 507 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 H3BNH8 94 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 XKRYO14609 159 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CHADO15335 359 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 OR1F1O43749 312 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PFKFB2O60825 505 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SEC22BO75396 215 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 VAMP5O95183 116 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 ALDOBP05062 364 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 ZDHHC11BP0C7U3 371 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CALCBP10092 127 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 STMN1P16949 149 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PSMC3P17980 439 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 TCN2P20062 427 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 IL10P22301 178 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 HTR2AP28223 471 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RPS14P62263 151 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PJVKQ0ZLH3 352 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 ASPHQ12797 758 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PDZK1IP1Q13113 114 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SRSF5Q13243 272 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SGCAQ16586 387 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 GUCA2BQ16661 112 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SLC10A5Q5PT55 438 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RAET1LQ5VY80 246 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 LCN12Q6JVE5 192 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 KCNIP4Q6PIL6 250 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 BLOC1S2Q6QNY1 142 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CATSPER1Q8NEC5 780 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 ZNF461Q8TAF7 563 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CD300LFQ8TDQ1 290 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 ACOT11Q8WXI4 607 aaPredicted RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CCDC47Q96A33 483 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 DNAJC19Q96DA6 116 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 MRPL38Q96DV4 380 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 MRPL45Q9BRJ2 306 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 NIPSNAP3BQ9BS92 247 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 EDEM2Q9BV94 578 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RIOK2Q9BVS4 552 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 HSD3B7Q9H2F3 369 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RBKSQ9H477 322 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RANBP3Q9H6Z4 567 aaPredicted RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SLC40A1Q9NP59 571 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SLCO1B3Q9NPD5 702 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 CTPS2Q9NRF8 586 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 HOXC10Q9NYD6 342 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SIGLEC8Q9NYZ4 499 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 SEC14L3Q9UDX4 400 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 HOOK1Q9UJC3 728 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PIN4Q9Y237 131 aaKnown RBP1.05□□□□□ -2.24
SCN1A-208ENST00000625916 RASD1Q9Y272 281 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 NFASCO94856 1347 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 MYO16Q9Y6X6 1858 aa1.05□□□□□ -2.24
SCN1A-208ENST00000625916 PLAC8L1A1L4L8 177 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 KRT87PA6NCN2 255 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 C12orf77C9JDV5 145 aa1.04□□□□□ -2.24
SCN1A-208ENST00000625916 F8WDY8 70 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms