RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CTXN1P60606 82 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 DBPQ10586 325 aaPredicted RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 ITGADQ13349 1161 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 CRMP1Q14194 572 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 MFSD13AQ14CX5 517 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 HYAL4Q2M3T9 481 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 MS4A18Q3C1V0 323 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 TMEM176BQ3YBM2 270 aaPredicted RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 NXNL2Q5VZ03 156 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 Q96M85 177 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 COPS4Q9BT78 406 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 ASPNQ9BXN1 380 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 TTTY12Q9BZ98 90 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 CCNB1IP1Q9NPC3 277 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 ALKBH4Q9NXW9 302 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 CNOT2Q9NZN8 540 aaKnown RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 SLC6A5Q9Y345 797 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 HDGFL3Q9Y3E1 203 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 PCDHGB1Q9Y5G3 927 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 MRPS14O60783 128 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 MT-ND2P03891 347 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 CDK1P06493 297 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 ADORA3P0DMS8 318 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 PIPP12273 146 aaPredicted RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 CD46P15529 392 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 GDF1P27539 372 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 NOS3P29474 1203 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 SFTPDP35247 375 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 P2RY4P51582 365 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 RAC1P63000 192 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 ZP4Q12836 540 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 PMS2P3Q13401 168 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 PLBD1Q6P4A8 553 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 KCTD8Q6ZWB6 473 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 CXXC5Q7LFL8 322 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 PRSS48Q7RTY5 328 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 SPACA3Q8IXA5 215 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 ZFP62Q8NB50 900 aaPredicted RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 SLC37A3Q8NCC5 494 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 NPEPL1Q8NDH3 523 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 OR52E2Q8NGJ4 325 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 OR4K13Q8NH42 304 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 RASD2Q96D21 266 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 TSPAN32Q96QS1 320 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 OR5B2Q96R09 309 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 SMAD5Q99717 465 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 MED20Q9H944 212 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 FANCFQ9NPI8 374 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 MRPS18AQ9NVS2 196 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 RPL36Q9Y3U8 105 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 EFCAB10A6NFE3 127 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 RIIAD1A6NNX1 92 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 IMPA2O14732 288 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 RGS10O43665 173 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 HPNP05981 417 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 SDHAP31040 664 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 EIF2S3P41091 472 aaKnown RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 MEOX1P50221 254 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 GFRA1P56159 465 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 ST3GAL4Q11206 333 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 TOMM20Q15388 145 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 ZNF766Q5HY98 468 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 WIPI1Q5MNZ9 446 aaPredicted RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 H1FNTQ75WM6 255 aaPredicted RBP12.81□□□□□ -0.36
USP39-220ENST00000613444 CYB561A3Q8NBI2 242 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 OR14L1PQ8NHC6 308 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 MIB2Q96AX9 1013 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 C5orf34Q96MH7 638 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.81□□□□□ -0.36
USP39-220ENST00000613444 CHST11Q9NPF2 352 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 TRAPPC4Q9Y296 219 aa12.81□□□□□ -0.36
USP39-220ENST00000613444 TEX13CA0A0J9YWL9 993 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 C11orf98E9PRG8 122 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 AKR7A3O95154 331 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 STSP08842 583 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CELA3AP09093 270 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 ZNF3P17036 446 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 SLC2A5P22732 501 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CD97P48960 835 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 EMX1Q04741 257 aaPredicted RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP39-220ENST00000613444 ZNF239Q16600 458 aaKnown RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 NADK2Q4G0N4 442 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 NIPAL3Q6P499 406 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 NHLRC1Q6VVB1 395 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 TMPPEQ6ZT21 453 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 TMEM251Q8N6I4 163 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 SDR9C7Q8NEX9 313 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 ZPLD1Q8TCW7 415 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 KISS1RQ969F8 398 aaPredicted RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 MFRPQ9BY79 579 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 KLHL21Q9UJP4 597 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 B3GALT5Q9Y2C3 310 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 BOD1L1Q8NFC6 3051 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CACNA1GO43497 2377 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 OR6C68A6NDL8 312 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 ZNF814B7Z6K7 855 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 KLRC4-KLRK1H3BQV0 150 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 TRAPPC6AO75865 159 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 IGHMP01871 453 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms