RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ELOVL5Q9NYP7 299 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 B3GAT1Q9P2W7 334 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 MED31Q9Y3C7 131 aa14.67□□□□□ -0.06
CCDC28A-202ENST00000611852 LOC102725191A0A1B0GVB3 256 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 A0A1W2PRQ8 180 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 MS4A18H0YCH9 400 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 STAMBPO95630 424 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 FABP3P05413 133 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 NQO1P15559 274 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 CD79BP40259 229 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 PCYT1AP49585 367 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 FAM27E3Q08E93 113 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 PMS2P3Q13401 168 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 DGCR6Q14129 220 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 MS4A18Q3C1V0 323 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 MEX3BQ6ZN04 569 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 BEND4Q6ZU67 534 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 CREB3L2Q70SY1 520 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SLC46A3Q7Z3Q1 461 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 KIF18BQ86Y91 864 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 DMRTC2Q8IXT2 367 aaPredicted RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 LRRC17Q8N6Y2 441 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 POP5Q969H6 163 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 TMEM45BQ96B21 275 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 LRGUKQ96M69 825 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 OXGR1Q96P68 337 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF385AQ96PM9 386 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 NANSQ9NR45 359 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF229Q9UJW7 825 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 A0A087WUU8 490 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 PIP5K1CO60331 668 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 MRPL33O75394 65 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 HPRP00739 348 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 H1F0P07305 194 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ASAH2BP0C7U1 165 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SORDQ00796 357 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SNTB1Q13884 538 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 EXOC3L2Q2M3D2 409 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 PIWIL3Q7Z3Z3 882 aaKnown RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 EPHX4Q8IUS5 362 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ZDHHC21Q8IVQ6 265 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF100Q8IYN0 542 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 OR5J2Q8NH18 312 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SLC7A13Q8TCU3 470 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ACOT11Q8WXI4 607 aaPredicted RBP14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SGTBQ96EQ0 304 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 DHRS1Q96LJ7 313 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 MAGIXQ9H6Y5 334 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 SLC7A8Q9UHI5 535 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 POMPQ9Y244 141 aa14.66□□□□□ -0.06
CCDC28A-202ENST00000611852 ANKHD1Q8IWZ3 2542 aaKnown RBP14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 H0YHG0 523 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 PLPP3O14495 311 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 COX6B1P14854 86 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 POU2F1P14859 743 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF43P17038 809 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 PEX19P40855 299 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 MAGEA2P43356 314 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 PUDPQ08623 228 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 FLOT2Q14254 428 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 ZNF787Q6DD87 383 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 TBPL2Q6SJ96 375 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 NRMQ8IXM6 262 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 RNF113BQ8IZP6 322 aaKnown RBP14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 GABRG1Q8N1C3 465 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 LIPHQ8WWY8 451 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 APH1AQ96BI3 265 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 BPIFA2Q96DR5 249 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 TRIM15Q9C019 465 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 MMADHCQ9H3L0 296 aaPredicted RBP14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 PARPBPQ9NWS1 579 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 PRSS50Q9UI38 385 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 TESMINQ9Y4I5 508 aa14.65□□□□□ -0.06
CCDC28A-202ENST00000611852 HTR3EA5X5Y0 456 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 AQP12BA6NM10 295 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 OR7A10O76100 309 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 CNOT4O95628 575 aaKnown RBP14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 UMPSP11172 480 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 IFI30P13284 250 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 FUT1P19526 365 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 CCKARP32238 428 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 UGT2B10P36537 528 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 FGD3Q5JSP0 725 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 PODNL1Q6PEZ8 512 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 CASP12Q6UXS9 341 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 ZNF730Q6ZMV8 503 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 Q6ZT83 130 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 MBOAT2Q6ZWT7 520 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 ASRGL1Q7L266 308 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 AAED1Q7RTV5 226 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 AQP12AQ8IXF9 295 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 ZNF347Q96SE7 839 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 FANCFQ9NPI8 374 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 TAS2R5Q9NYW4 299 aa14.64□□□□□ -0.07
CCDC28A-202ENST00000611852 TRBV4-1A0A0J9YWV2 114 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 C16orf97H3BN30 126 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 TRAF3IP2O43734 574 aaPredicted RBP14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 IGHV3-9P01782 118 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 HIST1H2ABP04908 130 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms