RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 CRYAAP02489 173 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 CXCR1P25024 350 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 THBS2P35442 1172 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 ACAA2P42765 397 aaKnown RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 MAP2K6P52564 334 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 CRISP3P54108 245 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 SRSF2Q01130 221 aaKnown RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 CEACAM7Q14002 265 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 SWI5Q1ZZU3 235 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 LIN52Q52LA3 116 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 PRAMEF8Q5VWM4 474 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 PRAMEF7Q5VXH5 474 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 PEX5LQ8IYB4 626 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 TMEM99Q8N816 258 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 ANKS4BQ8N8V4 417 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 OR52P1PQ8NH57 321 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 MAL2Q969L2 176 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 MSI2Q96DH6 328 aaKnown RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 ZNF385AQ96PM9 386 aaKnown RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 SLC38A2Q96QD8 506 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 ADAM19Q9H013 955 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 MYOZ1Q9NP98 299 aaPredicted RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 CA10Q9NS85 328 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 VAPAQ9P0L0 249 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 ZNF443Q9Y2A4 671 aaPredicted RBP12.85□□□□□ -0.35
PNKP-202ENST00000593706 IGHV1-18A0A0C4DH31 117 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 A0A0G2JPF8 293 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 LOC390937A0A1W2PQ73 354 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 SLC35F4A4IF30 521 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 VWC2LB2RUY7 222 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 HNRNPCL2B2RXH8 293 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 HNRNPCL3B7ZW38 293 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 ZNF587BE7ETH6 402 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 HNRNPCL1O60812 293 aaKnown RBP12.84□□□□□ -0.35
PNKP-202ENST00000593706 HNRNPCL4P0DMR1 293 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 SERPINF1P36955 418 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 UBE2NP61088 152 aaKnown RBP12.84□□□□□ -0.35
PNKP-202ENST00000593706 AGKQ53H12 422 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 VHLLQ6RSH7 139 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 DLEU7Q6UYE1 221 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 CLIP4Q8N3C7 705 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 CADM2Q8N3J6 435 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 THOC1Q96FV9 657 aaKnown RBP12.84□□□□□ -0.35
PNKP-202ENST00000593706 ALKBH3Q96Q83 286 aaPredicted RBP12.84□□□□□ -0.35
PNKP-202ENST00000593706 SIKE1Q9BRV8 207 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 SF3B5Q9BWJ5 86 aaKnown RBP12.84□□□□□ -0.35
PNKP-202ENST00000593706 PRR14Q9BWN1 585 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 TAPBPLQ9BX59 468 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 NPHS2Q9NP85 383 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 OBP2BQ9NPH6 170 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 ADPRHL2Q9NX46 363 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 PRDM4Q9UKN5 801 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 TENM1Q9UKZ4 2725 aa12.84□□□□□ -0.35
PNKP-202ENST00000593706 IGHV4-61A0A0C4DH41 118 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 LIPT2A6NK58 231 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 AQP7P3A6NL99 342 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 LGI1O95970 557 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 GKN3PP0CG01 181 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 PRG2P13727 222 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 COPZ1P61923 177 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 ADRM1Q16186 407 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 MST1LQ2TV78 715 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 TBRG1Q3YBR2 411 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 TMEM225Q6GV28 225 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 RETREG3Q86VR2 466 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 COMTD1Q86VU5 262 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 ZNF440Q8IYI8 595 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 DPP10Q8N608 796 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 OR1K1Q8NGR3 316 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 FOXN4Q96NZ1 517 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 CPPED1Q9BRF8 314 aaPredicted RBP12.83□□□□□ -0.36
PNKP-202ENST00000593706 KATNB1Q9BVA0 655 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 RAD21L1Q9H4I0 556 aa12.83□□□□□ -0.36
PNKP-202ENST00000593706 B9A039 149 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 PDE5AO76074 875 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TGFAP01135 160 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ERCC1P07992 297 aaPredicted RBP12.82□□□□□ -0.36
PNKP-202ENST00000593706 OR4A8P0C604 315 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ARAFP10398 606 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ZNF23P17027 643 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 GPX2P18283 190 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TUBA1BP68363 451 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TUBA4AP68366 448 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 LGALS3BPQ08380 585 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ZSWIM7Q19AV6 140 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 CGB2Q6NT52 195 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TUBA1AQ71U36 451 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ZIC4Q8N9L1 334 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 ZNF540Q8NDQ6 660 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 BBS10Q8TAM1 723 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 SLC35B4Q969S0 331 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 SPATA9Q9BWV2 254 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 BPESC1Q9GZL8 116 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 RABEP2Q9H5N1 569 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TMEM38AQ9H6F2 299 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 DYSFO75923 2080 aa12.82□□□□□ -0.36
PNKP-202ENST00000593706 TMEM229AB2RXF0 380 aa12.81□□□□□ -0.36
PNKP-202ENST00000593706 FRS3O43559 492 aa12.81□□□□□ -0.36
PNKP-202ENST00000593706 ETS2P15036 469 aa12.81□□□□□ -0.36
PNKP-202ENST00000593706 NCF2P19878 526 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms