RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 FAM162AQ96A26 154 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 ZC3HAV1LQ96H79 300 aaKnown RBP17.05■□□□□ 0.32
SS18-208ENST00000577751 NSL1Q96IY1 281 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 CDRT15Q96T59 188 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 GORASP2Q9H8Y8 452 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 MEPEQ9NQ76 525 aaPredicted RBP17.05■□□□□ 0.32
SS18-208ENST00000577751 SLC7A10Q9NS82 523 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 ASB6Q9NWX5 421 aa17.05■□□□□ 0.32
SS18-208ENST00000577751 C6orf203Q9P0P8 240 aaPredicted RBP17.05■□□□□ 0.32
SS18-208ENST00000577751 KLF4O43474 513 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 LYZL6O75951 148 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 ZNF682O95780 498 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 ZNF43P17038 809 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 LOXP28300 417 aaPredicted RBP17.04■□□□□ 0.32
SS18-208ENST00000577751 RBM34P42696 430 aaKnown RBP17.04■□□□□ 0.32
SS18-208ENST00000577751 FAPQ12884 760 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 ZNF74Q16587 644 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 SPATS1Q496A3 300 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 IFI44LQ53G44 452 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 SAMD4BQ5PRF9 694 aaKnown RBP17.04■□□□□ 0.32
SS18-208ENST00000577751 DEFB107AQ8IZN7 70 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 FAM156AQ8NDB6 213 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 BCAS4Q8TDM0 211 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 GEMIN6Q8WXD5 167 aaKnown RBP17.04■□□□□ 0.32
SS18-208ENST00000577751 PRRC1Q96M27 445 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 ASPNQ9BXN1 380 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 SLCO5A1Q9H2Y9 848 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 DCAF13Q9NV06 445 aaKnown RBP17.04■□□□□ 0.32
SS18-208ENST00000577751 SNX13Q9Y5W8 968 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 ABCA4P78363 2273 aa17.04■□□□□ 0.32
SS18-208ENST00000577751 TACC2O95359 2948 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 LRBAP50851 2863 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 A0A1W2PPR1 153 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 B2RBV5 119 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 PLPP3O14495 311 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 ZNF432O94892 652 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 IGF2P01344 180 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 IFNW1P05000 195 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 ITGA5P08648 1049 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 T-ENOLP0DO92 83 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 SELENOPP49908 381 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 FOXG1P55316 489 aaPredicted RBP17.03■□□□□ 0.32
SS18-208ENST00000577751 ST3GAL3Q11203 375 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 TAB1Q15750 504 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 POMGNT2Q8NAT1 580 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 OR5J2Q8NH18 312 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 TMEM255BQ8WV15 326 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 HSD17B8Q92506 261 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 HSH2DQ96JZ2 352 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 PLEKHF2Q9H8W4 249 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 FKRPQ9H9S5 495 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 TAS2R16Q9NYV7 291 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 UPB1Q9UBR1 384 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 RPS6KA6Q9UK32 745 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 RCE1Q9Y256 329 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 PRR14LQ5THK1 2151 aa17.03■□□□□ 0.32
SS18-208ENST00000577751 HRNRQ86YZ3 2850 aaPredicted RBP17.03■□□□□ 0.32
SS18-208ENST00000577751 FFAR1O14842 300 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 TRAF3IP2O43734 574 aaPredicted RBP17.02■□□□□ 0.32
SS18-208ENST00000577751 PRSS23O95084 383 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 CH25HO95992 272 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 HPRP00739 348 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 MT-ND1P03886 318 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 NQO1P15559 274 aaKnown RBP17.02■□□□□ 0.32
SS18-208ENST00000577751 TCN1P20061 433 aaPredicted RBP17.02■□□□□ 0.32
SS18-208ENST00000577751 CALB2P22676 271 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 UGT2B15P54855 530 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 CLDN17P56750 224 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 MXRA7P84157 204 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 PMS2P3Q13401 168 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 FBXW10Q5XX13 1052 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 SEZ6L2Q6UXD5 910 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 FKBP9P1Q75LS8 142 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 TSEN54Q7Z6J9 526 aaKnown RBP17.02■□□□□ 0.32
SS18-208ENST00000577751 P2RY8Q86VZ1 359 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 C10orf53Q8N6V4 93 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 RBM15BQ8NDT2 890 aaKnown RBP17.02■□□□□ 0.32
SS18-208ENST00000577751 TMEM239Q8WW34 195 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 HS6ST2Q96MM7 605 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 MUS81Q96NY9 551 aa17.02■□□□□ 0.32
SS18-208ENST00000577751 OR6C65A6NJZ3 312 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 J3KTA2 159 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 KPNA4O00629 521 aaPredicted RBP17.01■□□□□ 0.31
SS18-208ENST00000577751 GMNNO75496 209 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 ASAH2BP0C7U1 165 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 HLA-DOBP13765 273 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 FUT4P22083 530 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 DNAJA1P31689 397 aaKnown RBP17.01■□□□□ 0.31
SS18-208ENST00000577751 YAP1P46937 504 aaKnown RBP17.01■□□□□ 0.31
SS18-208ENST00000577751 PUDPQ08623 228 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 ZP4Q12836 540 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 C1DQ13901 141 aaKnown RBP17.01■□□□□ 0.31
SS18-208ENST00000577751 GABRA6Q16445 453 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 BEX5Q5H9J7 111 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 TIMM23BQ5SRD1 257 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 NIPAL3Q6P499 406 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 SLC46A3Q7Z3Q1 461 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 PXKQ7Z7A4 578 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 WFDC8Q8IUA0 241 aa17.01■□□□□ 0.31
SS18-208ENST00000577751 OFCC1Q8IZS5 231 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms