RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ZNF14P17017 642 aaPredicted RBP13.53□□□□□ -0.24
VPS53-218ENST00000575207 GSTM5P46439 218 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 SELENOPP49908 381 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 SELENOVP59797 346 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 GALK2Q01415 458 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 ACSM2AQ08AH3 577 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 C2orf80Q0P641 193 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 TMEM155Q4W5P6 130 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 ESCO2Q56NI9 601 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 FAM209AQ5JX71 171 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 ACSM2BQ68CK6 577 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 FRRS1Q6ZNA5 592 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 ZNF551Q7Z340 670 aaPredicted RBP13.53□□□□□ -0.24
VPS53-218ENST00000575207 CMC1Q7Z7K0 106 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 CDC26Q8NHZ8 85 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 NEURL3Q96EH8 262 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 TSPAN32Q96QS1 320 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 EBPLQ9BY08 206 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 CTPS2Q9NRF8 586 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 SLCO1C1Q9NYB5 712 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 CPSF2Q9P2I0 782 aaKnown RBP13.53□□□□□ -0.24
VPS53-218ENST00000575207 DTNAQ9Y4J8 743 aa13.53□□□□□ -0.24
VPS53-218ENST00000575207 IGHV2-70DA0A0C4DH43 119 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 ANKRD28O15084 1053 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 ZFPL1O95159 310 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 HSD3B1P14060 373 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 HSD3B2P26439 372 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 CAPZA2P47755 286 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 ATP12AP54707 1039 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 ROR2Q01974 943 aaKnown RBP13.52□□□□□ -0.25
VPS53-218ENST00000575207 SPIN4Q56A73 249 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 CDC73Q6P1J9 531 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 RNF144BQ7Z419 303 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 LDLRAD3Q86YD5 345 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 OR4F17Q8NGA8 305 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 LRTOMTQ8WZ04 291 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 R3HDM4Q96D70 268 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 NSUN5Q96P11 429 aaKnown RBP13.52□□□□□ -0.25
VPS53-218ENST00000575207 OR4F4Q96R69 305 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 PCTPQ9UKL6 214 aa13.52□□□□□ -0.25
VPS53-218ENST00000575207 CCDC189A1A4V9 331 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 CYP7B1O75881 506 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 TGDSO95455 350 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 ANXA4P09525 319 aaPredicted RBP13.51□□□□□ -0.25
VPS53-218ENST00000575207 SBK2P0C263 348 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 IMPDH2P12268 514 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 ZNF250P15622 560 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 CHN1P15882 459 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 TGFBR2P37173 567 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 MMP16P51512 607 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 KLF3P57682 345 aaPredicted RBP13.51□□□□□ -0.25
VPS53-218ENST00000575207 EGFEM1PQ0D2K5 195 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 SKP2Q13309 424 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 TSTQ16762 297 aaKnown RBP13.51□□□□□ -0.25
VPS53-218ENST00000575207 PRAMEF8Q5VWM4 474 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 PRAMEF7Q5VXH5 474 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 FAM219BQ5XKK7 198 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 RGS7BPQ6MZT1 257 aaPredicted RBP13.51□□□□□ -0.25
VPS53-218ENST00000575207 ZCCHC12Q6PEW1 402 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 C11orf88Q6PI97 169 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 C6orf89Q6UWU4 347 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 RAB40AQ8WXH6 277 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 MAP6Q96JE9 813 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 CPNE1Q99829 537 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 DESI2Q9BSY9 194 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 SLC7A8Q9UHI5 535 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 FOXJ3Q9UPW0 622 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 LRCH1Q9Y2L9 728 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 USH1CQ9Y6N9 552 aa13.51□□□□□ -0.25
VPS53-218ENST00000575207 CD33P20138 364 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 CXCR5P32302 372 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 EFNB2P52799 333 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 SLC35E4Q6ICL7 350 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 LETMD1Q6P1Q0 360 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 CENPLQ8N0S6 344 aaPredicted RBP13.5□□□□□ -0.25
VPS53-218ENST00000575207 PTGR2Q8N8N7 351 aaPredicted RBP13.5□□□□□ -0.25
VPS53-218ENST00000575207 MGARPQ8TDB4 240 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 CDS1Q92903 461 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 APIPQ96GX9 242 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 PALMDQ9NP74 551 aa13.5□□□□□ -0.25
VPS53-218ENST00000575207 KIR2DS1A0A191URI9 304 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 OTCP00480 354 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 CRABP2P29373 138 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 GABRA5P31644 462 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 PPP1R7Q15435 360 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 FAM83EQ2M2I3 478 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 NSUN5P1Q3KNT7 163 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 NKAPLQ5M9Q1 402 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 FAM71E1Q6IPT2 247 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 GPAT4Q86UL3 456 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 LRRC28Q86X40 367 aaPredicted RBP13.49□□□□□ -0.25
VPS53-218ENST00000575207 LYG1Q8N1E2 194 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 FBXO36Q8NEA4 188 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 KIF18AQ8NI77 898 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 SYNPRQ8TBG9 265 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 GRK7Q8WTQ7 553 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 CHMP6Q96FZ7 201 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 IQCGQ9H095 443 aaKnown RBP13.49□□□□□ -0.25
VPS53-218ENST00000575207 DPAGT1Q9H3H5 408 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 DUSP22Q9NRW4 184 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms