RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 FAM20BO75063 409 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 ENTPD6O75354 484 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 SLC2A10O95528 541 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 TXNDC12O95881 172 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 F13BP05160 661 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 CELA3AP09093 270 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 POU3F2P20265 443 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-209ENST00000573474 CD97P48960 835 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 DIO1P49895 249 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 GABARAPL2P60520 117 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 CSNK2A1P68400 391 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-209ENST00000573474 PUDPQ08623 228 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF169Q14929 603 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-209ENST00000573474 SMN1Q16637 294 aaKnown RBP12.29□□□□□ -0.44
CCDC40-209ENST00000573474 MS4A18Q3C1V0 323 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 EMC4Q5J8M3 183 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 GPR139Q6DWJ6 353 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 TSPAN14Q8NG11 270 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 SNRNP27Q8WVK2 155 aaKnown RBP12.29□□□□□ -0.44
CCDC40-209ENST00000573474 LRR1Q96L50 414 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 DNAJC27Q9NZQ0 273 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 SCOCQ9UIL1 159 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 GPR52Q9Y2T5 361 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 ADAM18Q9Y3Q7 739 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 EIF4E1BA6NMX2 242 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 SNTNA6NMZ2 147 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 C1QTNF9BB2RNN3 333 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 C11orf98E9PRG8 122 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 M0R3G1 203 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 DNPH1O43598 174 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 EIF1BO60739 113 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 AKR7A3O95154 331 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 C1QTNF9P0C862 333 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF3P17036 446 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 AHCYP23526 432 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 EEF1B2P24534 225 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 SDHAP31040 664 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 C19orf57Q0VDD7 668 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF239Q16600 458 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF362Q5T0B9 420 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 TMEM154Q6P9G4 183 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 UNQ6494/PRO21346Q6UXR6 183 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 Q6ZS92 163 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ESPNLQ6ZVH7 1005 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 FAM122BQ7Z309 247 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 TMEM99Q8N816 258 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ANKK1Q8NFD2 765 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 OR52E2Q8NGJ4 325 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 IPCEF1Q8WWN9 437 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF582Q96NG8 517 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 NAA11Q9BSU3 229 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ZDHHC11Q9H8X9 412 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 FANCFQ9NPI8 374 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 H2AFY2Q9P0M6 372 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 GRHPRQ9UBQ7 328 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 PSORS1C1Q9UIG5 152 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 RPL36Q9Y3U8 105 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 URB1O60287 2271 aaKnown RBP12.28□□□□□ -0.44
CCDC40-209ENST00000573474 MPDZO75970 2070 aa12.28□□□□□ -0.44
CCDC40-209ENST00000573474 ACACAQ13085 2346 aa12.27□□□□□ -0.44
CCDC40-209ENST00000573474 A0A087WXM4 84 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 A0A1W2PNV4 684 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 A0A1W2PRG6 482 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 EFCAB10A6NFE3 127 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 AQP7P3A6NL99 342 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 KDM4EB2RXH2 506 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PTGES3LE9PB15 166 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PRR23D1E9PI22 279 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TAF4O00268 1085 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 EIF1AYO14602 144 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 TNFSF11O14788 317 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PRODHO43272 600 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 SEC14L5O43304 696 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 IGHMP01871 453 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PDGFAP04085 211 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ITGB2P05107 769 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PRR23D2P0DMB1 279 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 HIST1H1CP16403 213 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PAICSP22234 425 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ACVR2AP27037 513 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 STARP49675 285 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 AGFG1P52594 562 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 NUDT6P53370 316 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 CLDN20P56880 219 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 CARD18P57730 90 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 RAC3P60763 192 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 RPL27P61353 136 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ITGADQ13349 1161 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 BCL2A1Q16548 175 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 RNFT1Q5M7Z0 435 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PDSS1Q5T2R2 415 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 AADACL4Q5VUY2 407 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 NXNL2Q5VZ03 156 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 HBMQ6B0K9 141 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PAQR6Q6TCH4 344 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 ASB18Q6ZVZ8 466 aa12.27□□□□□ -0.45
CCDC40-209ENST00000573474 CXXC5Q7LFL8 322 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 BCDIN3DQ7Z5W3 292 aaKnown RBP12.27□□□□□ -0.45
CCDC40-209ENST00000573474 PXKQ7Z7A4 578 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms