RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 VAMP5O95183 116 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 HPXP02790 462 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 GAAP10253 952 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 HOXB1P14653 301 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-206ENST00000572083 RPS4Y1P22090 263 aaKnown RBP17.09■□□□□ 0.33
CCDC40-206ENST00000572083 COL8A2P25067 703 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 RNF130Q86XS8 419 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 KDM8Q8N371 416 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 CADM2Q8N3J6 435 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 OR51F2Q8NH61 342 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 ZNF837Q96EG3 531 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-206ENST00000572083 RBM4Q9BWF3 364 aaKnown RBP17.09■□□□□ 0.33
CCDC40-206ENST00000572083 RASD1Q9Y272 281 aa17.09■□□□□ 0.33
CCDC40-206ENST00000572083 LOC105371242A0A075B767 164 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 A8MVM7 634 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 TFP02787 698 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 ARR3P36575 388 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 ALDH3B1P43353 468 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 ARFIP2P53365 341 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 CLDN17P56750 224 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 POU3F1Q03052 451 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-206ENST00000572083 GNA13Q14344 377 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 GSTA3Q16772 222 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 AWAT1Q58HT5 328 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 ANXA8L1Q5VT79 327 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 C1orf140Q5VVS0 124 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 C1orf229Q6ZS94 237 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-206ENST00000572083 USP43Q70EL4 1123 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 MRPL24Q96A35 216 aaKnown RBP17.08■□□□□ 0.32
CCDC40-206ENST00000572083 SYT3Q9BQG1 590 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 DPY30Q9C005 99 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 RACGAP1Q9H0H5 632 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 REV1Q9UBZ9 1251 aa17.08■□□□□ 0.32
CCDC40-206ENST00000572083 RPL36A-HNRNPH2H7BZ11 118 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 PNPP00491 289 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 ACHEP22303 614 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 CASP8Q14790 479 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 PDCD2Q16342 344 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-206ENST00000572083 CEACAM16Q2WEN9 425 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 SPANXN4Q5MJ08 99 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 LRRC74BQ6ZQY2 392 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 YIPF5Q969M3 257 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 MS4A3Q96HJ5 214 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 RHOXF2Q9BQY4 288 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 GPR35Q9HC97 309 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 ZNF275Q9NSD4 429 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-206ENST00000572083 MKS1Q9NXB0 559 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 SEC14L4Q9UDX3 406 aa17.07■□□□□ 0.32
CCDC40-206ENST00000572083 AVPP01185 164 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 DBIP07108 87 aaKnown RBP17.06■□□□□ 0.32
CCDC40-206ENST00000572083 PNMTP11086 282 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 NR4A1P22736 598 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 ACAA2P42765 397 aaKnown RBP17.06■□□□□ 0.32
CCDC40-206ENST00000572083 SEC24CP53992 1094 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 MAD2L1BPQ15013 274 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-206ENST00000572083 SLC9B1Q4ZJI4 515 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 WBP2NLQ6ICG8 309 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 ZNF836Q6ZNA1 936 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 VRK2Q86Y07 508 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 ZNF440Q8IYI8 595 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 GPR137CQ8N3F9 429 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 VPS37AQ8NEZ2 397 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 KIF18AQ8NI77 898 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 RDH5Q92781 318 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 SLC25A36Q96CQ1 311 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 JMJD8Q96S16 334 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 AKTIPQ9H8T0 292 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 MTHFD2LQ9H903 347 aaPredicted RBP17.06■□□□□ 0.32
CCDC40-206ENST00000572083 PPCSQ9HAB8 311 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 RCE1Q9Y256 329 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 PCDHGB1Q9Y5G3 927 aa17.06■□□□□ 0.32
CCDC40-206ENST00000572083 CMYA5Q8N3K9 4069 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 CDHR4A6H8M9 788 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 PPIHO43447 177 aaKnown RBP17.05■□□□□ 0.32
CCDC40-206ENST00000572083 NPIPB7O75200 414 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 SLC43A1O75387 559 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 SPAG7O75391 227 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 NCR1O76036 304 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 ZNF432O94892 652 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 TFPTP0C1Z6 253 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 NR2F1P10589 423 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 PRG2P13727 222 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 ZNF43P17038 809 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 SERPINB5P36952 375 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 COPZ1P61923 177 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 LMO4P61968 165 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 PRR31Q5SQ13 230 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 ATG16L1Q676U5 607 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 LRP11Q86VZ4 500 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 ANKK1Q8NFD2 765 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 IL17RDQ8NFM7 739 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 PNPT1Q8TCS8 783 aaKnown RBP17.05■□□□□ 0.32
CCDC40-206ENST00000572083 TESCQ96BS2 214 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 SLC6A7Q99884 636 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 MS4A5Q9H3V2 200 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 MYEF2Q9P2K5 600 aaKnown RBP17.05■□□□□ 0.32
CCDC40-206ENST00000572083 FZR1Q9UM11 496 aa17.05■□□□□ 0.32
CCDC40-206ENST00000572083 TRAV20A0A0B4J274 112 aa17.04■□□□□ 0.32
CCDC40-206ENST00000572083 FTCDNL1E5RQL4 147 aa17.04■□□□□ 0.32
CCDC40-206ENST00000572083 TMPRSS2O15393 492 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms