RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 BGLAPP02818 100 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 UMPSP11172 480 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 TCN1P20061 433 aaPredicted RBP11.49□□□□□ -0.57
CLK3-224ENST00000568605 PTNP21246 168 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 HOXC12P31275 282 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 P2RY4P51582 365 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 TGFBR3Q03167 851 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 PUDPQ08623 228 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 PMS2P3Q13401 168 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 CREB3L2Q70SY1 520 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.49□□□□□ -0.57
CLK3-224ENST00000568605 TRPM8Q7Z2W7 1104 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 P3H2Q8IVL5 708 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 OR5J2Q8NH18 312 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 S100PBPQ96BU1 408 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 ZC3HAV1LQ96H79 300 aaKnown RBP11.49□□□□□ -0.57
CLK3-224ENST00000568605 NSMCE2Q96MF7 247 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 WFIKKN1Q96NZ8 548 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 CDRT15Q96T59 188 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 FNDC11Q9BVV2 318 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 MUC13Q9H3R2 512 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 GORASP2Q9H8Y8 452 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 RASSF1Q9NS23 344 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 TAS2R16Q9NYV7 291 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 GMPR2Q9P2T1 348 aaKnown RBP11.49□□□□□ -0.57
CLK3-224ENST00000568605 ZNF229Q9UJW7 825 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 MED31Q9Y3C7 131 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 PRR14LQ5THK1 2151 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 NOTCH2Q04721 2471 aa11.49□□□□□ -0.57
CLK3-224ENST00000568605 LOC102725191A0A1B0GVB3 256 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 CIB4A0PJX0 185 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 ENO4A6NNW6 628 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 LYZL6O75951 148 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 STAMBPO95630 424 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 IGF2P01344 180 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 IGHV3-9P01782 118 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 MT-ND1P03886 318 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 HIST1H2ABP04908 130 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 CBLP22681 906 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 DNAJA1P31689 397 aaKnown RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 CLDN17P56750 224 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 POU3F1Q03052 451 aaPredicted RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 FAPQ12884 760 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 PIN1Q13526 163 aaPredicted RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 ZNF74Q16587 644 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 FXNQ16595 210 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 MTX3Q5HYI7 312 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 OR7E24Q6IFN5 339 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 NIPAL3Q6P499 406 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 WDR88Q6ZMY6 472 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 HIST3H2AQ7L7L0 130 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 NANOGNBQ7Z5D8 188 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 P2RY8Q86VZ1 359 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 FAM156AQ8NDB6 213 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 TMEM239Q8WW34 195 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 HSD17B8Q92506 261 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 HIST1H2ACQ93077 130 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 MOGAT1Q96PD6 335 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 ZNF385AQ96PM9 386 aaKnown RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 PRSS27Q9BQR3 290 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 AMBRA1Q9C0C7 1298 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 PRPF19Q9UMS4 504 aaKnown RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 FAM32AQ9Y421 112 aaKnown RBP11.48□□□□□ -0.57
CLK3-224ENST00000568605 NOX1Q9Y5S8 564 aa11.48□□□□□ -0.57
CLK3-224ENST00000568605 FAM221AA4D161 298 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 CYSRT1A8MQ03 144 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ZNF587BE7ETH6 402 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ARPC2O15144 300 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 SLC43A1O75387 559 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 RAD51DO75771 328 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 LYPD3O95274 346 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 THY1P04216 161 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ADORA3P0DMS8 318 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ITGA2P17301 1181 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 IGHV1-2P23083 117 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 AHCYP23526 432 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 NR1H2P55055 460 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 TRAM2Q15035 370 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 STK11Q15831 433 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 BEX5Q5H9J7 111 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 TIMM23BQ5SRD1 257 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 C1QTNF12Q5T7M4 302 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ANKRD34AQ69YU3 496 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 KLHL24Q6TFL4 600 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 HDDC2Q7Z4H3 204 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 CDH24Q86UP0 819 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 TSPYL5Q86VY4 417 aaPredicted RBP11.47□□□□□ -0.57
CLK3-224ENST00000568605 WFDC8Q8IUA0 241 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 RBM15BQ8NDT2 890 aaKnown RBP11.47□□□□□ -0.57
CLK3-224ENST00000568605 PIK3C3Q8NEB9 887 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 C1orf162Q8NEQ5 155 aaPredicted RBP11.47□□□□□ -0.57
CLK3-224ENST00000568605 ANKK1Q8NFD2 765 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 TMEM255BQ8WV15 326 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 MCUR1Q96AQ8 359 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 MUCL1Q96DR8 90 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ALKBH3Q96Q83 286 aaPredicted RBP11.47□□□□□ -0.57
CLK3-224ENST00000568605 C1orf21Q9H246 121 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 ANKRD19PQ9H560 264 aa11.47□□□□□ -0.57
CLK3-224ENST00000568605 KRCC1Q9NPI7 259 aaPredicted RBP11.47□□□□□ -0.57
CLK3-224ENST00000568605 DCAF13Q9NV06 445 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms