RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KLHL30Q0D2K2 578 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 SF3A2Q15428 464 aaKnown RBP1.4□□□□□ -2.19
VPS35-207ENST00000568191 ATP6AP1Q15904 470 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 FAM71F2Q6NXP2 309 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 THOC6Q86W42 341 aaKnown RBP1.4□□□□□ -2.19
VPS35-207ENST00000568191 PAQR7Q86WK9 346 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 KRTAP13-1Q8IUC0 172 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 PGAM4Q8N0Y7 254 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 STXBP6Q8NFX7 210 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 OR10T2Q8NGX3 314 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 OR10C1Q96KK4 312 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 AMDHD1Q96NU7 426 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 RNF157Q96PX1 679 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 MRPL45Q9BRJ2 306 aaKnown RBP1.4□□□□□ -2.19
VPS35-207ENST00000568191 SLC35A5Q9BS91 424 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 ALG12Q9BV10 488 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 SUDS3Q9H7L9 328 aaPredicted RBP1.4□□□□□ -2.19
VPS35-207ENST00000568191 ZFP14Q9HCL3 533 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 ACTR3BQ9P1U1 418 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 CLCF1Q9UBD9 225 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 MRPS33Q9Y291 106 aaKnown RBP1.4□□□□□ -2.19
VPS35-207ENST00000568191 SF3B1O75533 1304 aaKnown RBP eCLIP1.4□□□□□ -2.19
VPS35-207ENST00000568191 A0A1W2PP18 115 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 GSAPA4D1B5 854 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 SUPT3HO75486 399 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 LRATO95237 230 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 IFNB1P01574 187 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 IGLV2-23P01705 113 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 KLK3P07288 261 aaPredicted RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 UBTFL1P0CB47 393 aaPredicted RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 CALCBP10092 127 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 CCND2P30279 289 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 RDXP35241 583 aaKnown RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 HMGCS1Q01581 520 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 C1orf61Q13536 156 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 SLC15A2Q16348 729 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 TMEM41BQ5BJD5 291 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 CARD16Q5EG05 197 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 COA6Q5JTJ3 125 aaKnown RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 SAMD4BQ5PRF9 694 aaKnown RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 NCR3LG1Q68D85 454 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 C1orf94Q6P1W5 598 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 LRRC8BQ6P9F7 803 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 H2AFVQ71UI9 128 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 OR1N2Q8NGR9 330 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 HTR3CQ8WXA8 447 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 ZNF416Q9BWM5 594 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 ACTR6Q9GZN1 396 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 SPNS1Q9H2V7 528 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 COQ10BQ9H8M1 238 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 SLCO1B3Q9NPD5 702 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 QPCTLQ9NXS2 382 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 TBK1Q9UHD2 729 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 ODF2LQ9ULJ1 636 aa1.39□□□□□ -2.19
VPS35-207ENST00000568191 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.39□□□□□ -2.19
VPS35-207ENST00000568191 SLC31A2O15432 143 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 RGS16O15492 202 aaPredicted RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 TAPBPO15533 448 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 RRP8O43159 456 aaKnown RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 LGALS2P05162 132 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 POLR2MP0CAP2 368 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 ARF4P18085 180 aaPredicted RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 TNNI3P19429 210 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 TCN2P20062 427 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 CNR1P21554 472 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 DRD5P21918 477 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 CALCRP30988 508 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 CD86P42081 329 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 AP3M2P53677 418 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 HSD17B7P56937 341 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 ACVR1Q04771 509 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 KIAA0087Q14695 138 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 PARP15Q460N3 678 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 C10orf120Q5SQS8 335 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 DNLZQ5SXM8 178 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 LCN12Q6JVE5 192 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 BLOC1S2Q6QNY1 142 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 BRD3OSQ6XYD6 125 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 Q6ZN92 141 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 ZNF573Q86YE8 665 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 CENPLQ8N0S6 344 aaPredicted RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 TMEM123Q8N131 208 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 DHRSXQ8N5I4 330 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 FAM86B1Q8N7N1 296 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 FADS6Q8N9I5 356 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 OR1F12Q8NHA8 337 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 ZNF461Q8TAF7 563 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 ZFP90Q8TF47 636 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 SPRYD4Q8WW59 207 aaPredicted RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 PAGE5Q96GU1 130 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 DNTTIP1Q9H147 329 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 DEFB127Q9H1M4 99 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 RWDD1Q9H446 243 aaPredicted RBP1.38□□□□□ -2.19
VPS35-207ENST00000568191 PALMDQ9NP74 551 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 IL26Q9NPH9 171 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 COPS3Q9UNS2 423 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 RASD1Q9Y272 281 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 BRWD3Q6RI45 1802 aa1.38□□□□□ -2.19
VPS35-207ENST00000568191 GPR179Q6PRD1 2367 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms