RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TRBV4-1A0A0J9YWV2 114 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 PLPP3O14495 311 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 FABP3P05413 133 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 MAKP20794 623 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 GTF2E2P29084 291 aaKnown RBP17.31■□□□□ 0.36
CLN3-225ENST00000566824 CCKARP32238 428 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 LGALS3BPQ08380 585 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 PMS2P3Q13401 168 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 SEC23BQ15437 767 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 MTX3Q5HYI7 312 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 PODNL1Q6PEZ8 512 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 CREB3L2Q70SY1 520 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 ASRGL1Q7L266 308 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 CYP4Z1Q86W10 505 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 NRMQ8IXM6 262 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 ADGRG5Q8IZF4 528 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 OR52J3Q8NH60 311 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 SLC7A13Q8TCU3 470 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 HS6ST2Q96MM7 605 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 TACO1Q9BSH4 297 aaKnown RBP17.31■□□□□ 0.36
CLN3-225ENST00000566824 SF3B5Q9BWJ5 86 aaKnown RBP17.31■□□□□ 0.36
CLN3-225ENST00000566824 ASPNQ9BXN1 380 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 MRPL39Q9NYK5 338 aaKnown RBP17.31■□□□□ 0.36
CLN3-225ENST00000566824 TAS2R5Q9NYW4 299 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 EMC3Q9P0I2 261 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 RASD1Q9Y272 281 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 MED31Q9Y3C7 131 aa17.31■□□□□ 0.36
CLN3-225ENST00000566824 GPR171O14626 319 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 OR7A10O76100 309 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 MT-ATP6P00846 226 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 H1F0P07305 194 aaKnown RBP17.3■□□□□ 0.36
CLN3-225ENST00000566824 ASAH2BP0C7U1 165 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 IFI30P13284 250 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 CD79BP40259 229 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 FOXG1P55316 489 aaPredicted RBP17.3■□□□□ 0.36
CLN3-225ENST00000566824 TSC22D1Q15714 1073 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 CCDC121Q6ZUS5 278 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 C22orf34Q6ZV56 151 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 DMRTC2Q8IXT2 367 aaPredicted RBP17.3■□□□□ 0.36
CLN3-225ENST00000566824 ADPRHL1Q8NDY3 354 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 OR5J2Q8NH18 312 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 UTP4Q969X6 686 aaKnown RBP17.3■□□□□ 0.36
CLN3-225ENST00000566824 SGTBQ96EQ0 304 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 OXGR1Q96P68 337 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 FKRPQ9H9S5 495 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 B3GALT5Q9Y2C3 310 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 FAM32AQ9Y421 112 aaKnown RBP17.3■□□□□ 0.36
CLN3-225ENST00000566824 CORINQ9Y5Q5 1042 aa17.3■□□□□ 0.36
CLN3-225ENST00000566824 A0A1W2PRQ8 180 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 TRAF3IP2O43734 574 aaPredicted RBP17.29■□□□□ 0.36
CLN3-225ENST00000566824 NQO1P15559 274 aaKnown RBP17.29■□□□□ 0.36
CLN3-225ENST00000566824 MAGEA2P43356 314 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 DGCR6Q14129 220 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 POU4F3Q15319 338 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 FGD3Q5JSP0 725 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 CASP12Q6UXS9 341 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 STAC2Q6ZMT1 411 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 PIWIL3Q7Z3Z3 882 aaKnown RBP17.29■□□□□ 0.36
CLN3-225ENST00000566824 ZNF100Q8IYN0 542 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 GABRG1Q8N1C3 465 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 SCAIQ8N9R8 606 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 LINC01560Q8TB33 94 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 ACOT11Q8WXI4 607 aaPredicted RBP17.29■□□□□ 0.36
CLN3-225ENST00000566824 MCUR1Q96AQ8 359 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 TXNDC15Q96J42 360 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 LRGUKQ96M69 825 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 NANSQ9NR45 359 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 VNN3Q9NY84 501 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 ZNF229Q9UJW7 825 aa17.29■□□□□ 0.36
CLN3-225ENST00000566824 C11orf98E9PRG8 122 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 MRPL33O75394 65 aaKnown RBP17.28■□□□□ 0.36
CLN3-225ENST00000566824 VAMP5O95183 116 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 UMPSP11172 480 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 POU2F1P14859 743 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 IFNA8P32881 189 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 SELENOPP49908 381 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 RASSF2P50749 326 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 IL1RL1Q01638 556 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 SPIBQ01892 262 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 PRKCDQ05655 676 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 FHL1Q13642 323 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 FLOT2Q14254 428 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 MFSD13AQ14CX5 517 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 ANKRD34AQ69YU3 496 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 ZNF730Q6ZMV8 503 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 MBOAT2Q6ZWT7 520 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 AAED1Q7RTV5 226 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 CXorf67Q86X51 503 aaPredicted RBP17.28■□□□□ 0.36
CLN3-225ENST00000566824 MOSPD2Q8NHP6 518 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 CANT1Q8WVQ1 401 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 TMEM45BQ96B21 275 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 BPIFA2Q96DR5 249 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 SPOCK3Q9BQ16 436 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 KLHL4Q9C0H6 718 aa17.28■□□□□ 0.36
CLN3-225ENST00000566824 LOC102725191A0A1B0GVB3 256 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 AQP12BA6NM10 295 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 EBAG9O00559 213 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 CDC42EP2O14613 210 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 SERPINI2O75830 405 aa17.27■□□□□ 0.36
CLN3-225ENST00000566824 ADAP00813 363 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms