RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TMEM120AQ9BXJ8 343 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 EVA1AQ9H8M9 152 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 SEC14L4Q9UDX3 406 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 AIM2O14862 343 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 LGI1O95970 557 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 HEXAP06865 529 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 TROVE2P10155 538 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-219ENST00000565778 FABP6P51161 128 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 SPOCK1Q08629 439 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 TNK1Q13470 666 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 HIKESHIQ53FT3 197 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 C1QTNF12Q5T7M4 302 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 H1FNTQ75WM6 255 aaPredicted RBP18.16■□□□□ 0.5
CLN3-219ENST00000565778 WFDC6Q9BQY6 131 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 FKRPQ9H9S5 495 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 B3GALT5Q9Y2C3 310 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 ATP23Q9Y6H3 246 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 USF3Q68DE3 2245 aa18.16■□□□□ 0.5
CLN3-219ENST00000565778 NIPBLQ6KC79 2804 aaeCLIP18.15■□□□□ 0.5
CLN3-219ENST00000565778 IGKV1D-42A0A075B6H8 117 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 A0A087WUJ7 227 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 M0R082 166 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 TPST2O60704 377 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 UPK3AO75631 287 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 OPN1SWP03999 348 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 GRPRP30550 384 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 TTKP33981 857 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 PCBP3P57721 371 aaKnown RBP18.15■□□□□ 0.5
CLN3-219ENST00000565778 SLC25A3Q00325 362 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 SF3A3Q12874 501 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLN3-219ENST00000565778 VEZF1Q14119 521 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 ETFDHQ16134 617 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 DUSP7Q16829 419 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 HMBOX1Q6NT76 420 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 DTX2Q86UW9 622 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 FBXL14Q8N1E6 418 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 OR10A6Q8NH74 314 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 ZNF417Q8TAU3 575 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 ZNF587Q96SQ5 575 aaPredicted RBP18.15■□□□□ 0.5
CLN3-219ENST00000565778 EPYCQ99645 322 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 MCHR1Q99705 422 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 DHRS9Q9BPW9 319 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 GRIP2Q9C0E4 1043 aa18.15■□□□□ 0.5
CLN3-219ENST00000565778 KAT8Q9H7Z6 458 aaKnown RBP18.15■□□□□ 0.5
CLN3-219ENST00000565778 NQO1P15559 274 aaKnown RBP18.14■□□□□ 0.49
CLN3-219ENST00000565778 ARFIP2P53365 341 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 CDH12P55289 794 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 UBE2NP61088 152 aaKnown RBP18.14■□□□□ 0.49
CLN3-219ENST00000565778 ROR2Q01974 943 aaKnown RBP18.14■□□□□ 0.49
CLN3-219ENST00000565778 CYLC2Q14093 348 aaPredicted RBP18.14■□□□□ 0.49
CLN3-219ENST00000565778 MFSD13AQ14CX5 517 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 SLC30A8Q8IWU4 369 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 C10orf53Q8N6V4 93 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 OR1K1Q8NGR3 316 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 SLC26A7Q8TE54 656 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 BOD1Q96IK1 185 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 HS6ST2Q96MM7 605 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 ALKBH3Q96Q83 286 aaPredicted RBP18.14■□□□□ 0.49
CLN3-219ENST00000565778 LINC00470Q9BZP3 86 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 KLHL14Q9P2G3 628 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 CADP27708 2225 aa18.14■□□□□ 0.49
CLN3-219ENST00000565778 A0A0B4J2E0 115 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 A0A1B0GX12 115 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 M0R3H8 397 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 FBP2O00757 339 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 NDUFS7O75251 213 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 SLC43A1O75387 559 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 C8BP07358 591 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 VIMP08670 466 aaKnown RBP18.13■□□□□ 0.49
CLN3-219ENST00000565778 ACVR1BP36896 505 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 TBRG1Q3YBR2 411 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 MMEL1Q495T6 779 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 NANOGP8Q6NSW7 305 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 LINGO2Q7L985 606 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 PATL1Q86TB9 770 aaKnown RBP18.13■□□□□ 0.49
CLN3-219ENST00000565778 MUC15Q8N387 334 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 OR6S1Q8NH40 331 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 BCL2L2Q92843 193 aaPredicted RBP18.13■□□□□ 0.49
CLN3-219ENST00000565778 ADAD1Q96M93 576 aaKnown RBP18.13■□□□□ 0.49
CLN3-219ENST00000565778 ASPNQ9BXN1 380 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 NANOGQ9H9S0 305 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 OBP2BQ9NPH6 170 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 CBLN4Q9NTU7 201 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 B3GAT1Q9P2W7 334 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 GDF2Q9UK05 429 aaPredicted RBP18.13■□□□□ 0.49
CLN3-219ENST00000565778 RCE1Q9Y256 329 aa18.13■□□□□ 0.49
CLN3-219ENST00000565778 A0A096LPE4 126 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 LOC102725191A0A1B0GVB3 256 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 A0A1W2PPZ6 126 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 MS4A18H0YCH9 400 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 IGHV4-39P01824 125 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 PMS2P3Q13401 168 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 MS4A18Q3C1V0 323 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 INTS11Q5TA45 600 aaKnown RBP18.12■□□□□ 0.49
CLN3-219ENST00000565778 ANKRD16Q6P6B7 361 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 B3GLCTQ6Y288 498 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 UEVLDQ8IX04 471 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 GPR137CQ8N3F9 429 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 GPR32P1Q8NGA4 272 aa18.12■□□□□ 0.49
CLN3-219ENST00000565778 ARHGDIGQ99819 225 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms