RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DCTN3O75935 186 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 NQO1P15559 274 aaKnown RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 EDNRAP25101 427 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 MPGP29372 298 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 GRPRP30550 384 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 NTF4P34130 210 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 GYS2P54840 703 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 SELENOWP63302 87 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 IL1RL1Q01638 556 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 LIPEQ05469 1076 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 C1DQ13901 141 aaKnown RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 PPA1Q15181 289 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 NPTX1Q15818 432 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 CYBRD1Q53TN4 286 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 ALKBH2Q6NS38 261 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 LINC00114Q6XXX2 140 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 C20orf204Q6ZNR8 217 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 CARM1Q86X55 608 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 C17orf78Q8N4C9 275 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 C10orf53Q8N6V4 93 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 ZIC4Q8N9L1 334 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 C1orf162Q8NEQ5 155 aaPredicted RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 ZNF417Q8TAU3 575 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 ZNF385AQ96PM9 386 aaKnown RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 ZNF587Q96SQ5 575 aaPredicted RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 SLC19A3Q9BZV2 496 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 SLC7A10Q9NS82 523 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 CMTM6Q9NX76 183 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 SLC7A7Q9UM01 511 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 RCE1Q9Y256 329 aa11.81□□□□□ -0.52
CLK3-216ENST00000564468 PRRC2AP48634 2157 aaKnown RBP11.81□□□□□ -0.52
CLK3-216ENST00000564468 RAD51DO75771 328 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 CD3EP07766 207 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 THRBP10828 461 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 PAX7P23759 505 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 HOXC12P31275 282 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 SLC7A2P52569 658 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 CRYBA2P53672 197 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 TAS2R41P59536 307 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 PMS2P3Q13401 168 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 ACKR1Q16570 336 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 TSPO2Q5TGU0 170 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 C8orf82Q6P1X6 216 aaPredicted RBP11.8□□□□□ -0.52
CLK3-216ENST00000564468 NIPAL3Q6P499 406 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 PIGWQ7Z7B1 504 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 RBM45Q8IUH3 476 aaKnown RBP11.8□□□□□ -0.52
CLK3-216ENST00000564468 EPHX4Q8IUS5 362 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 OR4D11Q8NGI4 311 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 PIGTQ969N2 578 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 SLC41A3Q96GZ6 507 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 MUS81Q96NY9 551 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 LRRC37BQ96QE4 947 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 ALPK1Q96QP1 1244 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 LINC00470Q9BZP3 86 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 ALG2Q9H553 416 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 MRPL39Q9NYK5 338 aaKnown RBP11.8□□□□□ -0.52
CLK3-216ENST00000564468 USP22Q9UPT9 525 aa11.8□□□□□ -0.52
CLK3-216ENST00000564468 MAGED1Q9Y5V3 778 aaPredicted RBP11.8□□□□□ -0.52
CLK3-216ENST00000564468 PLCE1Q9P212 2302 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 A0A1W2PPR1 153 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 ZNF587BE7ETH6 402 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 PDLIM1O00151 329 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 CXCR6O00574 342 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 NME4O00746 187 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 SLC43A1O75387 559 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 GMNNO75496 209 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 OR5F1O95221 314 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 OR6A2O95222 327 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 ATE1O95260 518 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 BGLAPP02818 100 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 HIST1H2ABP04908 130 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 CBLP22681 906 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 LOXP28300 417 aaPredicted RBP11.79□□□□□ -0.52
CLK3-216ENST00000564468 CLDN17P56750 224 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 PSME3P61289 254 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 GABRA6Q16445 453 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 DEFB113Q30KQ7 82 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 NCMAPQ5T1S8 102 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 KLHL17Q6TDP4 642 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 DEF8Q6ZN54 512 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 ZNF704Q6ZNC4 412 aaPredicted RBP11.79□□□□□ -0.52
CLK3-216ENST00000564468 HIST3H2AQ7L7L0 130 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 P3H2Q8IVL5 708 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 UEVLDQ8IX04 471 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 KDM8Q8N371 416 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 ANKK1Q8NFD2 765 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 OR5J2Q8NH18 312 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 HIST1H2ACQ93077 130 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 TPD52L3Q96J77 140 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 HS6ST2Q96MM7 605 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 HS3ST6Q96QI5 342 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 PIP5K1AQ99755 562 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 KCTD14Q9BQ13 255 aaPredicted RBP11.79□□□□□ -0.52
CLK3-216ENST00000564468 TMUB1Q9BVT8 246 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 AMBRA1Q9C0C7 1298 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 FKRPQ9H9S5 495 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 UBTD1Q9HAC8 227 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 SPAG4Q9NPE6 437 aa11.79□□□□□ -0.52
CLK3-216ENST00000564468 BEX4Q9NWD9 120 aaPredicted RBP11.79□□□□□ -0.52
CLK3-216ENST00000564468 ABCD2Q9UBJ2 740 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms