RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CYBRD1Q53TN4 286 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 ALKBH2Q6NS38 261 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 LINC00114Q6XXX2 140 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 C20orf204Q6ZNR8 217 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 CARM1Q86X55 608 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 C17orf78Q8N4C9 275 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 C10orf53Q8N6V4 93 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 ZIC4Q8N9L1 334 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 C1orf162Q8NEQ5 155 aaPredicted RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 ZNF417Q8TAU3 575 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 ZNF385AQ96PM9 386 aaKnown RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 ZNF587Q96SQ5 575 aaPredicted RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 SLC19A3Q9BZV2 496 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 SLC7A10Q9NS82 523 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 CMTM6Q9NX76 183 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 SLC7A7Q9UM01 511 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 RCE1Q9Y256 329 aa11.81□□□□□ -0.52
CLK3-213ENST00000563842 PRRC2AP48634 2157 aaKnown RBP11.81□□□□□ -0.52
CLK3-213ENST00000563842 RAD51DO75771 328 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 CD3EP07766 207 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 THRBP10828 461 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 PAX7P23759 505 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 HOXC12P31275 282 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 SLC7A2P52569 658 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 CRYBA2P53672 197 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 TAS2R41P59536 307 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 PMS2P3Q13401 168 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 ACKR1Q16570 336 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 TSPO2Q5TGU0 170 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 C8orf82Q6P1X6 216 aaPredicted RBP11.8□□□□□ -0.52
CLK3-213ENST00000563842 NIPAL3Q6P499 406 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 SPNS3Q6ZMD2 512 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 PIGWQ7Z7B1 504 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 RBM45Q8IUH3 476 aaKnown RBP11.8□□□□□ -0.52
CLK3-213ENST00000563842 EPHX4Q8IUS5 362 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 OR4D11Q8NGI4 311 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 PIGTQ969N2 578 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 SLC41A3Q96GZ6 507 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 MUS81Q96NY9 551 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 LRRC37BQ96QE4 947 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 ALPK1Q96QP1 1244 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 LINC00470Q9BZP3 86 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 ALG2Q9H553 416 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 MRPL39Q9NYK5 338 aaKnown RBP11.8□□□□□ -0.52
CLK3-213ENST00000563842 USP22Q9UPT9 525 aa11.8□□□□□ -0.52
CLK3-213ENST00000563842 MAGED1Q9Y5V3 778 aaPredicted RBP11.8□□□□□ -0.52
CLK3-213ENST00000563842 PLCE1Q9P212 2302 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 A0A1W2PPR1 153 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 ZNF587BE7ETH6 402 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 PDLIM1O00151 329 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 CXCR6O00574 342 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 NME4O00746 187 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 SLC43A1O75387 559 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 GMNNO75496 209 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 OR5F1O95221 314 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 OR6A2O95222 327 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 ATE1O95260 518 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 BGLAPP02818 100 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 HIST1H2ABP04908 130 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 CBLP22681 906 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 LOXP28300 417 aaPredicted RBP11.79□□□□□ -0.52
CLK3-213ENST00000563842 CLDN17P56750 224 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 PSME3P61289 254 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 TESK1Q15569 626 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 GABRA6Q16445 453 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 DEFB113Q30KQ7 82 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 NCMAPQ5T1S8 102 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 KLHL17Q6TDP4 642 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 DEF8Q6ZN54 512 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 ZNF704Q6ZNC4 412 aaPredicted RBP11.79□□□□□ -0.52
CLK3-213ENST00000563842 HIST3H2AQ7L7L0 130 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 P3H2Q8IVL5 708 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 UEVLDQ8IX04 471 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 KDM8Q8N371 416 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 ANKK1Q8NFD2 765 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 OR5J2Q8NH18 312 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 HIST1H2ACQ93077 130 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 TPD52L3Q96J77 140 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 HS6ST2Q96MM7 605 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 HS3ST6Q96QI5 342 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 PIP5K1AQ99755 562 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 KCTD14Q9BQ13 255 aaPredicted RBP11.79□□□□□ -0.52
CLK3-213ENST00000563842 AMBRA1Q9C0C7 1298 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 FKRPQ9H9S5 495 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 UBTD1Q9HAC8 227 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 SPAG4Q9NPE6 437 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 BEX4Q9NWD9 120 aaPredicted RBP11.79□□□□□ -0.52
CLK3-213ENST00000563842 ABCD2Q9UBJ2 740 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 AMDHD2Q9Y303 409 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 RNF115Q9Y4L5 304 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 NOX1Q9Y5S8 564 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 OTOGQ6ZRI0 2925 aa11.79□□□□□ -0.52
CLK3-213ENST00000563842 F8P00451 2351 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 HTR3EA5X5Y0 456 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 TMCC2O75069 709 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 WNT11O96014 354 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 IGF2P01344 180 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 ITGA5P08648 1049 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 CD53P19397 219 aa11.78□□□□□ -0.52
CLK3-213ENST00000563842 RBM34P42696 430 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms