RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LRRC56Q8IYG6 542 aaPredicted RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 INTS14Q96SY0 518 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 GPATCH2Q9NW75 528 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 VNN3Q9NY84 501 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PILRAQ9UKJ1 303 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 RAXQ9Y2V3 346 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PCDHGB5Q9Y5G0 923 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PATJQ8NI35 1801 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 A0A1W2PR80 420 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PLOD2O00469 737 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ZNF208O43345 1280 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 TRMUO75648 421 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 IFNA6P05013 189 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 CD14P08571 375 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ZNF883P0CG24 379 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 FGF5P12034 268 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 BMP2P12643 396 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ACP1P24666 158 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 APOBEC1P41238 236 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 MAGEA5P43359 124 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PSG6Q00889 435 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 IL18Q14116 193 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ADPRMQ3LIE5 342 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 MRM1Q6IN84 353 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 ZNF613Q6PF04 617 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PM20D2Q8IYS1 436 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 C1orf216Q8TAB5 229 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 RHBDL2Q9NX52 303 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 RSL24D1Q9UHA3 163 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 PAIP2BQ9ULR5 123 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 TCRBV16S1A1N1A0A5B0 115 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PMS2P1A4D2B8 440 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 SLC22A20A6NK97 555 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 FTCDNL1E5RQL4 147 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ZNF587BE7ETH6 402 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 EDN3P14138 238 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 GSTT1P30711 240 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 SPHARQ15513 63 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PGGHGQ32M88 737 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 BORAQ6PGQ7 559 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 FAM131AQ6UXB0 335 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 MBOAT2Q6ZWT7 520 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 ABHD12BQ7Z5M8 362 aaPredicted RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 TRMT10AQ8TBZ6 339 aaKnown RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 SLC25A43Q8WUT9 341 aaPredicted RBP8.42□□□□□ -1.06
VPS39-205ENST00000562258 PRO3102Q9H379 93 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 PARD6AQ9NPB6 346 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 MED17Q9NVC6 651 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 HRH3Q9Y5N1 445 aa8.42□□□□□ -1.06
VPS39-205ENST00000562258 HTTP42858 3142 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 HSPA12AO43301 675 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 KDM4BO94953 1096 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ABHD16AO95870 558 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MAS1P04201 325 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 HNRNPCP07910 306 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS39-205ENST00000562258 MSL3P1P0C860 447 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ZNF117Q03924 483 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 NKPD1Q17RQ9 610 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 HYAL4Q2M3T9 481 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 NKAPLQ5M9Q1 402 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 TSPYL5Q86VY4 417 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 OR52N5Q8NH56 324 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MGLLQ99685 303 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MN1Q10571 1320 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 CDHR4A6H8M9 788 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CD8B2A6NJW9 211 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 RAD51DO75771 328 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 HPP00738 406 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 C1QCP02747 245 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 HLA-DPB1P04440 258 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 OR8G3PP0DMU2 310 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CD8BP10966 210 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 PRPH2P23942 346 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CD96P40200 585 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ADH7P40394 386 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 SLC37A1P57057 533 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 SELENBP1Q13228 472 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 TOMM34Q15785 309 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 CLPPQ16740 277 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 CEACAM19Q7Z692 300 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 GLB1L2Q8IW92 636 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ZNF675Q8TD23 568 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 TUBA1CQ9BQE3 449 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 LAT2Q9GZY6 243 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 POLE3Q9NRF9 147 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 LANCL2Q9NS86 450 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 SLC7A11Q9UPY5 501 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ASPDHA6ND91 283 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 OR6C70A6NIJ9 312 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 C4orf51C9J302 202 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ACOT8O14734 319 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CDRT1O95170 752 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 THBS1P07996 1170 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ACKR1Q16570 336 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 PLAG1Q6DJT9 500 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 GPR139Q6DWJ6 353 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CORO6Q6QEF8 472 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MSRB3Q8IXL7 192 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CMIPQ8IY22 773 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 FTMTQ8N4E7 242 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms