RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SRSF1Q07955 248 aaKnown RBP eCLIP8.25□□□□□ -1.091e-6■■■■□ 21.7
LDLR-210ENST00000559340 PMPCAQ10713 525 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 TSPAN31Q12999 210 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 MRPL49Q13405 166 aaKnown RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 POU4F3Q15319 338 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZBED5Q49AG3 693 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 AMIGO2Q86SJ2 522 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 OAFQ86UD1 273 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 UEVLDQ8IX04 471 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 PQLC1Q8N2U9 271 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 TMEM99Q8N816 258 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ANKK1Q8NFD2 765 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 PFN4Q8NHR9 129 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZNF417Q8TAU3 575 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 FNDC9Q8TBE3 224 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ASB5Q8WWX0 329 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 LRTOMTQ8WZ04 291 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ROBO4Q8WZ75 1007 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 LRRC46Q96FV0 321 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 GMPPAQ96IJ6 420 aaPredicted RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZNF587Q96SQ5 575 aaPredicted RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 PSD2Q9BQI7 771 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 TTYH2Q9BSA4 534 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 DGCR6LQ9BY27 220 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 SRXN1Q9BYN0 137 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 C8orf4Q9NR00 106 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 KIF17Q9P2E2 1029 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 SH3BGRL2Q9UJC5 107 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 SLC5A6Q9Y289 635 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 NOX1Q9Y5S8 564 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 HECTD1Q9ULT8 2610 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 IGKV3D-15A0A087WSY6 115 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 A0A1W2PRG6 482 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 OR6C65A6NJZ3 312 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 BLOC1S5-TXNDC5H3BN57 136 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 H3BNX3 289 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PLPP3O14495 311 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 DVL2O14641 736 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 SMAD9O15198 467 aaKnown RBP8.24□□□□□ -1.09
LDLR-210ENST00000559340 ZNHIT1O43257 154 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 RNF13O43567 381 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PIP5K1CO60331 668 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 NDUFB2O95178 105 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 TGM6O95932 706 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 TMIGD3P0DMS9 266 aaPredicted RBP8.24□□□□□ -1.09
LDLR-210ENST00000559340 CBLP22681 906 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 FPR3P25089 353 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 GPR4P46093 362 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 GSSP48637 474 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 SLC16A1P53985 500 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PUDPQ08623 228 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 SEC23BQ15437 767 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 RTL6Q6ICC9 239 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 CD300LDQ6UXZ3 194 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 SLC46A3Q7Z3Q1 461 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PXKQ7Z7A4 578 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 ZER1Q7Z7L7 766 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 GALNT5Q7Z7M9 940 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 STK32CQ86UX6 486 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 FJX1Q86VR8 437 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 ATG16L2Q8NAA4 619 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 AQP11Q8NBQ7 271 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 ICA1LQ8NDH6 482 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 OR52L1Q8NGH7 329 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 RNF128Q8TEB7 428 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 DNAJA3Q96EY1 480 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 FAM46AQ96IP4 442 aaKnown RBP8.24□□□□□ -1.09
LDLR-210ENST00000559340 MOGAT1Q96PD6 335 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 DMRTA2Q96SC8 542 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PKP2Q99959 881 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 C9orf16Q9BUW7 83 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 SFXN3Q9BWM7 321 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 TEX12Q9BXU0 123 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 UCK2Q9BZX2 261 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 PIGMQ9H3S5 423 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 BCO1Q9HAY6 547 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 NTN4Q9HB63 628 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 INIPQ9NRY2 104 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 C20orf141Q9NUB4 165 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 ZNF629Q9UEG4 869 aaPredicted RBP8.24□□□□□ -1.09
LDLR-210ENST00000559340 ERRFI1Q9UJM3 462 aaPredicted RBP8.24□□□□□ -1.09
LDLR-210ENST00000559340 HIF3AQ9Y2N7 669 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 FAM215AQ9Y5M1 114 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 ORC6Q9Y5N6 252 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 BSNQ9UPA5 3926 aa8.24□□□□□ -1.09
LDLR-210ENST00000559340 IGHV3-15A0A0B4J1V0 119 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 A0A1W2PNV4 684 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 ZNF726A6NNF4 738 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 C11orf98E9PRG8 122 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 MS4A18H0YCH9 400 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 LRRTM2O43300 516 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 SS18L1O75177 396 aaPredicted RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 PTP4A3O75365 173 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 MRPL33O75394 65 aaKnown RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 AQP8O94778 261 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 BCL10O95999 233 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 GASTP01350 101 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 ANPEPP15144 967 aa8.23□□□□□ -1.09
LDLR-210ENST00000559340 CDH2P19022 906 aaPredicted RBP8.23□□□□□ -1.09
LDLR-210ENST00000559340 MAKP20794 623 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms