RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LRFN4Q6PJG9 635 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 SLITRK4Q8IW52 837 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 RAB42Q8N4Z0 105 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 SFXN5Q8TD22 340 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 FCAMRQ8WWV6 532 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 ATOH1Q92858 354 aaPredicted RBP11.3□□□□□ -0.6
LDLR-205ENST00000557933 KLHDC3Q9BQ90 382 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 PPA2Q9H2U2 334 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 SAV1Q9H4B6 383 aaPredicted RBP11.3□□□□□ -0.6
LDLR-205ENST00000557933 NCDNQ9UBB6 729 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 FBXL3Q9UKT7 428 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 EDDM13A0A1B0GTR0 161 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 POM121BA6NF01 834 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 FAM74A7A6NL05 159 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 MCRIP1C9JLW8 97 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 CENPAP49450 140 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 AKR1D1P51857 326 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 PITPNAQ00169 270 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 TFF2Q03403 129 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 RAB30Q15771 203 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 FAM74A3Q4VXF1 159 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 C4orf46Q504U0 113 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 SLC22A10Q63ZE4 541 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 TPRA1Q86W33 373 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 SEC22AQ96IW7 307 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 CNN2Q99439 309 aaKnown RBP11.3□□□□□ -0.6
LDLR-205ENST00000557933 CDCA3Q99618 268 aaPredicted RBP11.3□□□□□ -0.6
LDLR-205ENST00000557933 PCBD2Q9H0N5 130 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 NRIP3Q9NQ35 241 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 CALML5Q9NZT1 146 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 ADAM29Q9UKF5 820 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 TDRD6O60522 2096 aaKnown RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 CREBL2O60519 120 aaPredicted RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 NID1P14543 1247 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 NAGAP17050 411 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 SLC2A5P22732 501 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 CSRP2Q16527 193 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 KIRREL2Q6UWL6 708 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 ADGRG3Q86Y34 549 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 ZNF454Q8N9F8 522 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR51D1Q8NGF3 324 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR51S1Q8NGJ8 323 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 KLHL9Q9P2J3 617 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 MRTO4Q9UKD2 239 aaKnown RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 SLC6A5Q9Y345 797 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR10H1Q9Y4A9 318 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 AUP1Q9Y679 476 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 PLSCR5A0PG75 271 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 ARL6IP5O75915 188 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 LYPD3O95274 346 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 MYOGP15173 224 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 PPM1FP49593 454 aaPredicted RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 STK11Q15831 433 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 TMEM35AQ53FP2 167 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 UBE2NLQ5JXB2 153 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR10K2Q6IF99 312 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 TMEM205Q6UW68 189 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 PARGQ86W56 976 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 GJD3Q8N144 294 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 ZNF619Q8N2I2 560 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 MUC20Q8N307 709 aaPredicted RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR52H1Q8NGJ2 320 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 THEM6Q8WUY1 208 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 CYYR1Q96J86 154 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 TMEM27Q9HBJ8 222 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 KRCC1Q9NPI7 259 aaPredicted RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 BAIAP2Q9UQB8 552 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 NPFFR2Q9Y5X5 522 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 DUXAA6NLW8 204 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 M0QYG6 137 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 CTNSO60931 367 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 RNGTTO60942 597 aaKnown RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 CEACAM5P06731 702 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 PON3Q15166 354 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 TMEM44Q2T9K0 475 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 FBXO42Q6P3S6 717 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 LEG1Q6P5S2 330 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 TMUB2Q71RG4 321 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 SLC35D2Q76EJ3 337 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 OR4C16Q8NGL9 310 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 SGTBQ96EQ0 304 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 RADILQ96JH8 1075 aa11.29□□□□□ -0.6
LDLR-205ENST00000557933 LYARQ9NX58 379 aaKnown RBP11.29□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3DA0A087WVF3 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3IA0A087WXS9 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3EA0A087X179 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3KA0A087X1G2 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3FA6NER0 549 aaPredicted RBP11.28□□□□□ -0.6
LDLR-205ENST00000557933 MFSD2BA6NFX1 497 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3LB9A6J9 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 ADH1CP00326 375 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 IGKV1D-16P01601 117 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3HP0C7X1 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 CTRB1P17538 263 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 AQP2P41181 271 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 BDH1Q02338 343 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 DMRTC1Q5HYR2 192 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 AGBL4Q5VU57 503 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D3GQ6DHY5 549 aa11.28□□□□□ -0.6
LDLR-205ENST00000557933 CTRB2Q6GPI1 263 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms