RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ELF5Q9UKW6 265 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ETV7Q9Y603 341 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 V9GY05 133 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 CHD9Q3L8U1 2897 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF593O00488 134 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 MT-ND4P03905 459 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 WNT1P04628 370 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 IFNA16P05015 189 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 TPOP07202 933 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 CTSBP07858 339 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 NUDT1P36639 197 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 PER3P56645 1201 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 COL28A1Q2UY09 1125 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 RNASE12Q5GAN4 147 aaKnown RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 LINGO2Q7L985 606 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF761Q86XN6 746 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZPLD1Q8TCW7 415 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 C17orf50Q8WW18 174 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 RADILQ96JH8 1075 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 GFI1Q99684 422 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 C20orf85Q9H1P6 137 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 C12orf10Q9HB07 376 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 UBQLN4Q9NRR5 601 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 SLC23A1Q9UHI7 598 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 NPTNQ9Y639 398 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 GOLGA4Q13439 2230 aaKnown RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ARPC4-TTLL3A0A0A6YYG9 625 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 HSPB2A8KAH6 182 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 GPR171O14626 319 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 KHNYNO15037 678 aaKnown RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 PEX14O75381 377 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 KRT33AO76009 404 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF432O94892 652 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 LDOC1O95751 146 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 TGM6O95932 706 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ANKRD34CP0C6C1 535 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 THEGLP0DJG4 465 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 SDHAP31040 664 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 CCR6P51684 374 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 SCAND1P57086 179 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 SHHQ15465 462 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 HSPB2Q16082 182 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ST3GAL2Q16842 350 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ESPNLQ6ZVH7 1005 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 FAM122BQ7Z309 247 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 FAM109AQ8N4B1 249 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 MOSPD2Q8NHP6 518 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 SLC25A38Q96DW6 304 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 NANSQ9NR45 359 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ANKRD10Q9NXR5 420 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 SCP2D1Q9UJQ7 156 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 NOS1APO75052 506 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 CLPSP04118 112 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 UBL4AP11441 157 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 PGDP52209 483 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 EPHA4P54764 986 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 NANOS3P60323 173 aaKnown RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 BTG2P78543 158 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 Q499Y3 187 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ALG10Q5BKT4 473 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 HES5Q5TA89 166 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 OLFML2AQ68BL7 652 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF687Q8N1G0 1237 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 FAM174AQ8TBP5 190 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 RGP1Q92546 391 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 NSMAFQ92636 917 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 S100A16Q96FQ6 103 aaKnown RBP12.31□□□□□ -0.44
SHMT2-222ENST00000555774 AUNIPQ9H7T9 357 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 UCK1Q9HA47 277 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 HRASLSQ9HDD0 168 aa12.31□□□□□ -0.44
SHMT2-222ENST00000555774 TRBV5-5A0A0J9YX44 114 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 ACOD1A6NK06 481 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 CDC123O75794 336 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 ZFPL1O95159 310 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 IL33O95760 270 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 AQP2P41181 271 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 CDKN2AP42771 156 aaKnown RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 OR3A3P47888 321 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 MAT1AQ00266 395 aaKnown RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 SKP2Q13309 424 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 ALKBH1Q13686 389 aaKnown RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 LRRN1Q6UXK5 716 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 PRSS45Q7RTY3 260 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 PARGQ86W56 976 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 OR8H1Q8NGG4 311 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 RNF166Q96A37 237 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-222ENST00000555774 Q96M85 177 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 ORAI3Q9BRQ5 295 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 MMP25Q9NPA2 562 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 PLCL2Q9UPR0 1127 aa12.3□□□□□ -0.44
SHMT2-222ENST00000555774 A0A1B0GUH1 482 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 H0YIG0 161 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SSNA1O43805 119 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 UPK3AO75631 287 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 RAF1P04049 648 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ASAH2BP0C7U1 165 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CXCL3P19876 107 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 PSMB1P20618 241 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms