RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CCDC167Q9P0B6 97 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 FBXO9Q9UK97 447 aaPredicted RBP11.14□□□□□ -0.63
LINC00643-202ENST00000553426 ADAM21Q9UKJ8 722 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 MOKQ9UQ07 419 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 RCE1Q9Y256 329 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 CHST2Q9Y4C5 530 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 HEATR1Q9H583 2144 aaKnown RBP11.14□□□□□ -0.63
LINC00643-202ENST00000553426 ABCA1O95477 2261 aa11.14□□□□□ -0.63
LINC00643-202ENST00000553426 SONP18583 2426 aaKnown RBP11.14□□□□□ -0.63
LINC00643-202ENST00000553426 PRORSD1PA6NEY8 169 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 EVPLLA8MZ36 301 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 NR5A2O00482 541 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 SLC43A1O75387 559 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 SERPINB7O75635 380 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 SLC6A2P23975 617 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 SERPINF1P36955 418 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 HOXC5Q00444 222 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 CDK6Q00534 326 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 LOXL1Q08397 574 aaPredicted RBP11.13□□□□□ -0.63
LINC00643-202ENST00000553426 MFSD13AQ14CX5 517 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 TMEM249Q2WGJ8 235 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 ALG10BQ5I7T1 473 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 LRIF1Q5T3J3 769 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 FAM69AQ5T7M9 428 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 PODNL1Q6PEZ8 512 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 ULK3Q6PHR2 472 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 BLOC1S3Q6QNY0 202 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 HIPK1Q86Z02 1210 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 EPHX4Q8IUS5 362 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 LSMEM1Q8N8F7 131 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 NFKBIDQ8NI38 313 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 RNF217Q8TC41 542 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 MAGEE2Q8TD90 523 aaPredicted RBP11.13□□□□□ -0.63
LINC00643-202ENST00000553426 HTRA1Q92743 480 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 PROX1Q92786 737 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 EPYCQ99645 322 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 CCDC28BQ9BUN5 200 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 KATNB1Q9BVA0 655 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 TMEM27Q9HBJ8 222 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 ALPK2Q86TB3 2170 aa11.13□□□□□ -0.63
LINC00643-202ENST00000553426 CHD3Q12873 2000 aaKnown RBP11.13□□□□□ -0.63
LINC00643-202ENST00000553426 TRAV36DV7A0A075B6V5 113 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 A0A096LPE4 126 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 ARPC4-TTLL3A0A0A6YYG9 625 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 IGHV1-18A0A0C4DH31 117 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 A0A1W2PPZ6 126 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 B9A039 149 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 FTCDNL1E5RQL4 147 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 GPRIN2O60269 458 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 UPK3AO75631 287 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 F12P00748 615 aaPredicted RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 ARAFP10398 606 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 NQO1P15559 274 aaKnown RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 IDH3AP50213 366 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 ROR2Q01974 943 aaKnown RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 EGR4Q05215 589 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 C3orf36Q3SXR2 165 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 FAM91A1Q658Y4 838 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 DHRS4L2Q6PKH6 230 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 C6orf89Q6UWU4 347 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 H1FNTQ75WM6 255 aaPredicted RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 SLC46A3Q7Z3Q1 461 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 CCDC36Q8IYA8 594 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 KDM8Q8N371 416 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 FAM169BQ8N8A8 192 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 PIK3C3Q8NEB9 887 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 OR4F15Q8NGB8 312 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 SPATA3Q8NHX4 192 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 BCL2L2Q92843 193 aaPredicted RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 KTI12Q96EK9 354 aaPredicted RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 SLC47A1Q96FL8 570 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 PTDSS2Q9BVG9 487 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 RABEP2Q9H5N1 569 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 CA10Q9NS85 328 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.12□□□□□ -0.63
LINC00643-202ENST00000553426 ATRQ13535 2644 aa11.12□□□□□ -0.63
LINC00643-202ENST00000553426 A0A1B0GWA3 101 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 RPL36A-HNRNPH2H7BZ11 118 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 M0R082 166 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 NDUFS8O00217 210 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 PDE5AO76074 875 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 ERCC1P07992 297 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-202ENST00000553426 USF1P22415 310 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-202ENST00000553426 GRPRP30550 384 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 CAPZA2P47755 286 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 PDLIM4P50479 330 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 AQP5P55064 265 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 RGS8P57771 180 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-202ENST00000553426 VLDLRP98155 873 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 NAAAQ02083 359 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 LGALS3BPQ08380 585 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 SCARB2Q14108 478 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 SWI5Q1ZZU3 235 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 AGKQ53H12 422 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 C6orf52Q5T4I8 152 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 CYB5R2Q6BCY4 276 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 VHLLQ6RSH7 139 aa11.11□□□□□ -0.63
LINC00643-202ENST00000553426 CXXC5Q7LFL8 322 aaKnown RBP11.11□□□□□ -0.63
LINC00643-202ENST00000553426 RANBP3LQ86VV4 465 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-202ENST00000553426 LSRQ86X29 649 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms