RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CD40LGP29965 261 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 SGCBQ16585 318 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 TBC1D25Q3MII6 688 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 C1QL3Q5VWW1 255 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 EXD3Q8N9H8 876 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 OR5J2Q8NH18 312 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 M1APQ8TC57 530 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 ZPLD1Q8TCW7 415 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 ZPBPQ9BS86 351 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 SNTG1Q9NSN8 517 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 GRHPRQ9UBQ7 328 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 MOKQ9UQ07 419 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 LOXL2Q9Y4K0 774 aa23.86■■□□□ 1.41
CCDC88C-205ENST00000553403 OR2T1O43869 369 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 IGHEP01854 428 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 F13BP05160 661 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 COX6A1P12074 109 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 CD59P13987 128 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 APOBEC1P41238 236 aaKnown RBP23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 PPP5CP53041 499 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 VASNQ6EMK4 673 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 SLC35F2Q8IXU6 374 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 RASL10BQ96S79 203 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 BARHL1Q9BZE3 327 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 GALNT9Q9HCQ5 603 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 TAS2R5Q9NYW4 299 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 KLRF1Q9NZS2 232 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 B3GALT1Q9Y5Z6 326 aa23.85■■□□□ 1.41
CCDC88C-205ENST00000553403 ETV2O00321 342 aaPredicted RBP23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 RNF13O43567 381 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 WISP1O95388 367 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 AHSA1O95433 338 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 TFP02787 698 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 PTGDSP41222 190 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 KRR1Q13601 381 aaKnown RBP23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 VASH1Q7L8A9 365 aaPredicted RBP23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 BTLAQ7Z6A9 289 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 SLC25A46Q96AG3 418 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 SPACA9Q96E40 222 aaPredicted RBP23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 MRPL48Q96GC5 212 aaKnown RBP23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 TSPAN32Q96QS1 320 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 PPP4R1LQ9P1A2 415 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 HS3ST3B1Q9Y662 390 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 MPDZO75970 2070 aa23.84■■□□□ 1.41
CCDC88C-205ENST00000553403 TEX51A0A1B0GUA7 166 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 A0A1W2PQ72 361 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 C2orf72A6NCS6 295 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 LRRTM2O43300 516 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 ETV6P41212 452 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 FOLR3P41439 243 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 E2F1Q01094 437 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 ZNF45Q02386 682 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 OR5M10Q6IEU7 315 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 SYS1Q8N2H4 156 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 C4orf36Q96KX1 117 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 TMED9Q9BVK6 235 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 METTL7AQ9H8H3 244 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 GALNT8Q9NY28 637 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 MED11Q9P086 117 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 ZMIZ1Q9ULJ6 1067 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 POLHQ9Y253 713 aa23.83■■□□□ 1.41
CCDC88C-205ENST00000553403 GABRPO00591 440 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 DXOO77932 396 aaKnown RBP23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 ACTA2P62736 377 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 ACTG2P63267 376 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 HSF2Q03933 536 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 RUNX1T1Q06455 604 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 TRAM1Q15629 374 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 LINC01590Q5TEZ4 76 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 OR10G3Q8NGC4 313 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 OR51L1Q8NGJ5 315 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNRF4Q8WWF5 429 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 SMURF1Q9HCE7 757 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNF346Q9UL40 294 aaKnown RBP23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 WIF1Q9Y5W5 379 aa23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 SIRT4Q9Y6E7 314 aaPredicted RBP23.83■■□□□ 1.4
CCDC88C-205ENST00000553403 IQCMA0A1B0GVH7 501 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 J3QLW9 94 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 CDX4O14627 284 aaPredicted RBP23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 PLPP2O43688 288 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 STK17BO94768 372 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNF19P17023 458 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 MAP2K6P52564 334 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 SLC25A53Q5H9E4 307 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 Q6ZNX1 250 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 MARCH9Q86YJ5 346 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 NAXDQ8IW45 347 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 SLC25A36Q96CQ1 311 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 KCNS3Q9BQ31 491 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 ALG12Q9BV10 488 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 RERGLQ9H628 205 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 RPRD1BQ9NQG5 326 aaKnown RBP23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 INIPQ9NRY2 104 aa23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 RYDENQ9NUL5 291 aaKnown RBP23.82■■□□□ 1.4
CCDC88C-205ENST00000553403 CFAP54Q96N23 3096 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 B4DXG7 233 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 ZNF208O43345 1280 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 RGS9O75916 674 aaPredicted RBP23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 RENP00797 406 aa23.81■■□□□ 1.4
CCDC88C-205ENST00000553403 GRPRP30550 384 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms