RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PIP5K1CO60331 668 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 DIRAS1O95057 198 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 HPRP00739 348 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 SEMG1P04279 462 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 NQO1P15559 274 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 PEX19P40855 299 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 RBM34P42696 430 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 PCYT1AP49585 367 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 LSM11P83369 360 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 BNIP1Q12981 228 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 PMS2P3Q13401 168 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 TRIM25Q14258 630 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 TSC22D1Q15714 1073 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ZNF74Q16587 644 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 MS4A18Q3C1V0 323 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ANKRD34AQ69YU3 496 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 CREB3L2Q70SY1 520 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 SLC46A3Q7Z3Q1 461 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 CXorf67Q86X51 503 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 LRRC17Q8N6Y2 441 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 SCAIQ8N9R8 606 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ADPRHL1Q8NDY3 354 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 TMEM239Q8WW34 195 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 TMEM45BQ96B21 275 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 CCDC124Q96CT7 223 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 PYURFQ96I23 114 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ASPNQ9BXN1 380 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 C20orf141Q9NUB4 165 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 MRPL39Q9NYK5 338 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 NDUFAF4Q9P032 175 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ACTR3BQ9P1U1 418 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 KCNN3Q9UGI6 736 aa12.49□□□□□ -0.41
PTCH1-226ENST00000553011 ANKRD17O75179 2603 aaKnown RBP12.49□□□□□ -0.41
PTCH1-226ENST00000553011 SH3D21A4FU49 640 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 PLPP3O14495 311 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 ADAP00813 363 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 MT-ATP6P00846 226 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 MT-ND1P03886 318 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 IFNA8P32881 189 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 IL1RL1Q01638 556 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 TRAM2Q15035 370 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 POU4F3Q15319 338 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 IQCCQ4KMZ1 466 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 DNAL1Q4LDG9 190 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 Q6ZT83 130 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 C22orf34Q6ZV56 151 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 AAED1Q7RTV5 226 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 CYP4Z1Q86W10 505 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 UBE2J2Q8N2K1 259 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 OR5J2Q8NH18 312 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 FAM222BQ8WU58 562 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 SGTBQ96EQ0 304 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 HS6ST2Q96MM7 605 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 WFIKKN1Q96NZ8 548 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 OXGR1Q96P68 337 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 MUC13Q9H3R2 512 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 HEATR1Q9H583 2144 aaKnown RBP12.48□□□□□ -0.41
PTCH1-226ENST00000553011 FKRPQ9H9S5 495 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 NANSQ9NR45 359 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 PARPBPQ9NWS1 579 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 MED31Q9Y3C7 131 aa12.48□□□□□ -0.41
PTCH1-226ENST00000553011 TRAF3IP2O43734 574 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 ADORA3P0DMS8 318 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 UMPSP11172 480 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 HLA-DOBP13765 273 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 ZNF43P17038 809 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 PSMB1P20618 241 aaKnown RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 IGHV1-2P23083 117 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 SELENOPP49908 381 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 FOXG1P55316 489 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 CLDN17P56750 224 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 TLE4Q04727 773 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 PUDPQ08623 228 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 C1DQ13901 141 aaKnown RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 SFRP5Q5T4F7 317 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 TSPO2Q5TGU0 170 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 FBXW9Q5XUX1 488 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 LCN8Q6JVE9 175 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 TBPL2Q6SJ96 375 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 DHFR2Q86XF0 187 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 MEX3DQ86XN8 651 aaKnown RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 PIK3C3Q8NEB9 887 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 BTBD10Q9BSF8 475 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 NMNAT1Q9HAN9 279 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 SLC24A3Q9HC58 644 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 FANCFQ9NPI8 374 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 SLC7A10Q9NS82 523 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 ZNF229Q9UJW7 825 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 FAM32AQ9Y421 112 aaKnown RBP12.47□□□□□ -0.41
PTCH1-226ENST00000553011 TESMINQ9Y4I5 508 aa12.47□□□□□ -0.41
PTCH1-226ENST00000553011 PLCE1Q9P212 2302 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 LRBAP50851 2863 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 CCDC168Q8NDH2 2452 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 TEX15Q9BXT5 2789 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 A0A087WUU8 490 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 LOC102725191A0A1B0GVB3 256 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 TCRBV5S2A0A599 114 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 C11orf98E9PRG8 122 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 SERPINI2O75830 405 aa12.46□□□□□ -0.41
PTCH1-226ENST00000553011 LYZL6O75951 148 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms