RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RPS6KB2Q9UBS0 482 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 DUX4Q9UBX2 424 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 ZNF282Q9UDV7 671 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CBLCQ9ULV8 474 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 SPTA1P02549 2419 aa7.03□□□□□ -1.28
LIMA1-216ENST00000552909 CD8B2A6NJW9 211 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PRR23D1E9PI22 279 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SCAMP2O15127 329 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF749O43361 778 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SOX30O94993 753 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 HPXP02790 462 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PRR23D2P0DMB1 279 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CD8BP10966 210 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ACP2P11117 423 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 STAT5AP42229 794 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CCR8P51685 355 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CASP9P55211 416 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PRDX1Q06830 199 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 GK2Q14410 553 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 HLXQ14774 488 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SLC25A30Q5SVS4 291 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SFRP5Q5T4F7 317 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 HBMQ6B0K9 141 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 FBXO42Q6P3S6 717 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 DEF8Q6ZN54 512 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ADCK2Q7Z695 626 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TMEM151BQ8IW70 566 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 IQCF1Q8N6M8 205 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CNOT9Q92600 299 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 RNFT2Q96EX2 444 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TREX2Q9BQ50 279 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 C7orf50Q9BRJ6 194 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 YIPF4Q9BSR8 244 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CHRNA10Q9GZZ6 450 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 FN3KQ9H479 309 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 BEX1Q9HBH7 125 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 LHX9Q9NQ69 397 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 DHCR7Q9UBM7 475 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 VPS29Q9UBQ0 182 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TINAGQ9UJW2 476 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SERTAD3Q9UJW9 196 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 KCND3Q9UK17 655 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PADI1Q9ULC6 663 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ERVK-19Q9WJR5 959 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 RELNP78509 3460 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 MED13Q9UHV7 2174 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 C2orf92A0A1B0GVN3 265 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 FEZF1A0PJY2 475 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SERTM1A2A2V5 107 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 MCRIP1C9JLW8 97 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TERTO14746 1132 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 NKX2-8O15522 239 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PRAF2O60831 178 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PEX14O75381 377 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ECDO95905 644 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TGFB1P01137 390 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 IFNA4P05014 189 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CD3GP09693 182 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 PPP3CBP16298 524 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TCN2P20062 427 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 RAB3BP20337 219 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 NPR2P20594 1047 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ATP5A1P25705 553 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 S100A11P31949 105 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 RORAP35398 523 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SOX18P35713 384 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 DLSTP36957 453 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CAPZA2P47755 286 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 KCNJ5P48544 419 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 FOXL2P58012 376 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 C21orf58P58505 322 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 RPS13P62277 151 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ERVK-25P63136 954 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CDK6Q00534 326 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SWI5Q1ZZU3 235 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 HFEQ30201 348 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CRB2Q5IJ48 1285 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 COX20Q5RI15 118 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 DCST1Q5T197 706 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ATP1A1-AS1Q5TC04 95 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 SEZ6L2Q6UXD5 910 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 IL20RBQ6UXL0 311 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CMIPQ8IY22 773 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 KRT78Q8N1N4 520 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 CAMKVQ8NCB2 501 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 OR1M1Q8NGA1 313 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 KCTD12Q96CX2 325 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 BBC3Q96PG8 261 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ABHD1Q96SE0 405 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 AIF1LQ9BQI0 150 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 TMPRSS13Q9BYE2 586 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 C20orf85Q9H1P6 137 aa7.02□□□□□ -1.29
LIMA1-216ENST00000552909 MRPS30Q9NP92 439 aaKnown RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 ZNF275Q9NSD4 429 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-216ENST00000552909 A0A1B0GVC2 190 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 A6NIN4 97 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SAP18O00422 153 aaKnown RBP7.01□□□□□ -1.29
LIMA1-216ENST00000552909 FAAHO00519 579 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 CHST10O43529 356 aa7.01□□□□□ -1.29
LIMA1-216ENST00000552909 SGCEO43556 437 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms