RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GSG1LQ6UXU4 331 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF783Q6ZMS7 281 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 KCTD20Q7Z5Y7 419 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LINC00471Q8N535 108 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR56B4Q8NH76 319 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR14C36Q8NHC7 312 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SYNPRQ8TBG9 265 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LGALS14Q8TCE9 139 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR8D1Q8WZ84 308 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 EID2BQ96D98 161 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SDHCQ99643 169 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF649Q9BS31 505 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 PARP12Q9H0J9 701 aaKnown RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CERS4Q9HA82 394 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MKKSQ9NPJ1 570 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF318Q5VUA4 2279 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ANTXRLA6NF34 631 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SLC33A1O00400 549 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TNFSF12O43508 249 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 B4GALT2O60909 372 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SNRNP70P08621 437 aaKnown RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZGLP1P0C6A0 271 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SLC35G6P0C7Q6 338 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TYRP1P17643 537 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SDHAP31040 664 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CCKBRP32239 447 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TRIM23P36406 574 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 EVX1P49640 407 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LIMK1P53667 647 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 PER3P56645 1201 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 RAB1AP62820 205 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MALLQ13021 153 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CHAF1BQ13112 559 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 RBM39Q14498 530 aaKnown RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF385BQ569K4 471 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 YIF1BQ5BJH7 314 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 IGSF11Q5DX21 431 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 FAM209BQ5JX69 171 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 GID4Q8IVV7 300 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MS4A15Q8N5U1 240 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF248Q8NDW4 579 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 BBS1Q8NFJ9 593 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR8J2Q8NGG1 315 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR10R2Q8NGX6 335 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR56A3Q8NH54 315 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM163Q8TC26 289 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF566Q969W8 418 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 FAM46BQ96A09 425 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 VOPP1Q96AW1 172 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 UPRTQ96BW1 309 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SLC41A3Q96GZ6 507 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM41AQ96HV5 264 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 RADILQ96JH8 1075 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 FCRL1Q96LA6 429 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR14A2Q96R54 314 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SLC22A12Q96S37 553 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 NKX3-1Q99801 234 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SMIM3Q9BZL3 60 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 DEC1Q9P2X7 70 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LAMP5Q9UJQ1 280 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 RAXQ9Y2V3 346 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 PCDHGB1Q9Y5G3 927 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CABIN1Q9Y6J0 2220 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LRRK1Q38SD2 2015 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SPENQ96T58 3664 aaKnown RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 hCG_1807616A0A1W2PRN6 198 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 C1orf196B1AJZ1 125 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 E9PQ18 207 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CCSO14618 274 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SCO2O43819 266 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TXNDC12O95881 172 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 GLAP06280 429 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 C8AP07357 584 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TACSTD2P09758 323 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TYRP14679 529 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CXCL3P19876 107 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 HOXC13P31276 330 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 PPM1AP35813 382 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MAGEA11P43364 429 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 GZMMP51124 257 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 LUMP51884 338 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 DLX5P56178 289 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 PLPP4Q5VZY2 271 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR5M10Q6IEU7 315 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 GRHL2Q6ISB3 625 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TCTN3Q6NUS6 607 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 HSD11B1LQ7Z5J1 315 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TSEN54Q7Z6J9 526 aaKnown RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 ZER1Q7Z7L7 766 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM25Q86YD3 366 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 GPALPP1Q8IXQ4 340 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 C12orf45Q8N5I9 185 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR9A2Q8NGT5 310 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MFSD8Q8NHS3 518 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 APH1BQ8WW43 257 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SMPDL3BQ92485 455 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 BARHL1Q9BZE3 327 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 OR52D1Q9H346 318 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 UBE2ZQ9H832 354 aaPredicted RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms