RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 GLRXP35754 106 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 CLK1P49759 484 aaKnown RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 SERPINB8P50452 374 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 BPIFB3P59826 476 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 TUBA1BP68363 451 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 TUBA4AP68366 448 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 BST1Q10588 318 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 BNIP1Q12981 228 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 DCTN2Q13561 401 aaKnown RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 MAD2L1BPQ15013 274 aaPredicted RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 LARS2Q15031 903 aaKnown RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 TOMM34Q15785 309 aaPredicted RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 OXLD1Q5BKU9 147 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 FAM209AQ5JX71 171 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 BTNL3Q6UXE8 466 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 TUBA1AQ71U36 451 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 CCDC36Q8IYA8 594 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 FITM2Q8N6M3 262 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 COX18Q8N8Q8 333 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 ELP4Q96EB1 424 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 C7orf26Q96N11 449 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 ATOH8Q96SQ7 321 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 KLHDC3Q9BQ90 382 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 NOL11Q9H8H0 719 aaKnown RBP7.79□□□□□ -1.16
USP28-205ENST00000537706 MIEF1Q9NQG6 463 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 VPS29Q9UBQ0 182 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 IL20RAQ9UHF4 553 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 DUSP13Q9UII6 198 aa7.79□□□□□ -1.16
USP28-205ENST00000537706 SLC22A23A1A5C7 686 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 BPGMP07738 259 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 BGNP21810 368 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 NTF4P34130 210 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 SPRP35270 261 aaPredicted RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 CAPZA2P47755 286 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 NCALDP61601 193 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 SLC35A1P78382 337 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 POU6F2P78424 691 aaPredicted RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 DEFB112Q30KQ8 113 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ATG16L1Q676U5 607 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 SZRD1Q7Z422 152 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ISCA2Q86U28 154 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 JAZF1Q86VZ6 243 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CCDC103Q8IW40 242 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 PHF21AQ96BD5 680 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ELMOD3Q96FG2 381 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 UBXN10Q96LJ8 280 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CDK15Q96Q40 435 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 DIRC2Q96SL1 478 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CHIAQ9BZP6 476 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 LAT2Q9GZY6 243 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 QRSL1Q9H0R6 528 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 PRDM13Q9H4Q3 707 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 PIF1Q9H611 641 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 SEC61A2Q9H9S3 476 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 NPHS2Q9NP85 383 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 HINT3Q9NQE9 182 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 NKIRAS2Q9NYR9 191 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 MTO1Q9Y2Z2 717 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 A0A096LPE4 126 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 MDFIC2A0A1B0GVS7 189 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 A0A1W2PPZ6 126 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ETV2O00321 342 aaPredicted RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 NR5A2O00482 541 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 GPR37O15354 613 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ZNF432O94892 652 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 NEFHP12036 1026 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 APOBEC1P41238 236 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 MAGEB1P43366 347 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 PRKAG1P54619 331 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CCL8P80075 99 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 HERPUD1Q15011 391 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 MOGQ16653 247 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CBLN3Q6UW01 205 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 LRRN1Q6UXK5 716 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 Q6YL49 198 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 GDPGP1Q6ZNW5 385 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CMIPQ8IY22 773 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 ZNF614Q8N883 585 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 CPEB3Q8NE35 698 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 C16orf78Q8WTQ4 265 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 SSMEM1Q8WWF3 244 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 MARS2Q96GW9 593 aaKnown RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 MMP26Q9NRE1 261 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 NKX1-2Q9UD57 310 aaPredicted RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 DCDC2Q9UHG0 476 aa7.78□□□□□ -1.16
USP28-205ENST00000537706 POLR3KQ9Y2Y1 108 aaPredicted RBP7.78□□□□□ -1.16
USP28-205ENST00000537706 C17orf100A8MU93 164 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 E9PQ18 207 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 ZNF264O43296 627 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 PLIN3O60664 434 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 SNNO75324 88 aaPredicted RBP7.77□□□□□ -1.17
USP28-205ENST00000537706 PDYNP01213 254 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 CELA3BP08861 270 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 IGHV4-38-2P0DP08 117 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 UBL4AP11441 157 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 HSD3B1P14060 373 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 DDCP20711 480 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 HSD3B2P26439 372 aa7.77□□□□□ -1.17
USP28-205ENST00000537706 PTDSS1P48651 473 aaKnown RBP7.77□□□□□ -1.17
USP28-205ENST00000537706 ACSM2AQ08AH3 577 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms