RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 PNMTP11086 282 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 GGTLC2Q14390 218 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 GCNT6Q5T4J0 391 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 C5orf46Q6UWT4 87 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 MAVSQ7Z434 540 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 GTF2H4Q92759 462 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 BCL2L2Q92843 193 aaPredicted RBP12.85□□□□□ -0.35
VPS28-215ENST00000531924 BOD1Q96IK1 185 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 OXGR1Q96P68 337 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 PIMREGQ9BSJ6 248 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 LINC00470Q9BZP3 86 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 PAIP1Q9H074 479 aaKnown RBP12.85□□□□□ -0.35
VPS28-215ENST00000531924 CA10Q9NS85 328 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 FBN1P35555 2871 aaKnown RBP12.85□□□□□ -0.35
VPS28-215ENST00000531924 ANK3Q12955 4377 aaKnown RBP12.85□□□□□ -0.35
VPS28-215ENST00000531924 B9A039 149 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 NDUFS8O00217 210 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 NR5A2O00482 541 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 NPIPB7O75200 414 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 LY6HO94772 140 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 ERCC1P07992 297 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 FAM157CP0CG43 387 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 HOXB1P14653 301 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 ETS2P15036 469 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 PPIBP23284 216 aaKnown RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 PRKAR1BP31321 381 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 CAPZA2P47755 286 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 GZMKP49863 264 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 P2RY4P51582 365 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 TUBA1BP68363 451 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 TUBA4AP68366 448 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS28-215ENST00000531924 EPGNQ6UW88 154 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 TUBA1AQ71U36 451 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 NET1Q7Z628 596 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 OR4F15Q8NGB8 312 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 NFKBIDQ8NI38 313 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 MAGEE2Q8TD90 523 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 DNAJA4Q8WW22 397 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 NANOS1Q8WY41 292 aaKnown RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 TMEM158Q8WZ71 300 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 SLC38A4Q969I6 547 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 KTI12Q96EK9 354 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 SHARPINQ9H0F6 387 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 C12orf10Q9HB07 376 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 TMBIM4Q9HC24 238 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 TCF7L2Q9NQB0 619 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 LPAR3Q9UBY5 353 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 FBXO9Q9UK97 447 aaPredicted RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 RCE1Q9Y256 329 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 CHST2Q9Y4C5 530 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 ABCA1O95477 2261 aa12.84□□□□□ -0.35
VPS28-215ENST00000531924 CHD3Q12873 2000 aaKnown RBP12.84□□□□□ -0.35
VPS28-215ENST00000531924 TRAV36DV7A0A075B6V5 113 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 ARPC4-TTLL3A0A0A6YYG9 625 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 FTCDNL1E5RQL4 147 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 OR4A8P0C604 315 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 NQO1P15559 274 aaKnown RBP12.83□□□□□ -0.36
VPS28-215ENST00000531924 ARF1P84077 181 aaKnown RBP12.83□□□□□ -0.36
VPS28-215ENST00000531924 CDK6Q00534 326 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 NAAAQ02083 359 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 SWI5Q1ZZU3 235 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 IQCCQ4KMZ1 466 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 ALG10BQ5I7T1 473 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 FAM69AQ5T7M9 428 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 REEP3Q6NUK4 255 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 UEVLDQ8IX04 471 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 C10orf53Q8N6V4 93 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 PIK3C3Q8NEB9 887 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 ANKK1Q8NFD2 765 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 LRRC8CQ8TDW0 803 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 TLCD1Q96CP7 247 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 ZNF607Q96SK3 696 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 RAB1BQ9H0U4 201 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 TMEM27Q9HBJ8 222 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 MYOZ1Q9NP98 299 aaPredicted RBP12.83□□□□□ -0.36
VPS28-215ENST00000531924 CCDC167Q9P0B6 97 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.83□□□□□ -0.36
VPS28-215ENST00000531924 CORO2BQ9UQ03 480 aa12.83□□□□□ -0.36
VPS28-215ENST00000531924 PLCE1Q9P212 2302 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 A0A096LNT2 108 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 A0A1B0GWA3 101 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 LOC390937A0A1W2PQ73 354 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 PRORSD1PA6NEY8 169 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 EVPLLA8MZ36 301 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 M0R082 166 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 SERPINB7O75635 380 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 PDE5AO76074 875 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 TGDSO95455 350 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 CECR9P0C854 216 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 BMP2P12643 396 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ZNF16P17020 682 aaPredicted RBP12.82□□□□□ -0.36
VPS28-215ENST00000531924 CBLP22681 906 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 SLC6A2P23975 617 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 GRPRP30550 384 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 IDH3GP51553 393 aaPredicted RBP12.82□□□□□ -0.36
VPS28-215ENST00000531924 RGS8P57771 180 aaPredicted RBP12.82□□□□□ -0.36
VPS28-215ENST00000531924 EGR4Q05215 589 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 NPRL3Q12980 569 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 MFSD13AQ14CX5 517 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms