RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 KRTAP17-1Q9BYP8 105 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 MS4A7Q9GZW8 240 aaPredicted RBP6.98□□□□□ -1.29
CD44-232ENST00000531118 LAT2Q9GZY6 243 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 VPS11Q9H270 941 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 PIGUQ9H490 435 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 CRLF2Q9HC73 371 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 GRHL1Q9NZI5 618 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 C1RLQ9NZP8 487 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 TMEM181Q9P2C4 612 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 ZNF346Q9UL40 294 aaKnown RBP6.98□□□□□ -1.29
CD44-232ENST00000531118 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.98□□□□□ -1.29
CD44-232ENST00000531118 AUP1Q9Y679 476 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 COL7A1Q02388 2944 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 DNAH7Q8WXX0 4024 aa6.98□□□□□ -1.29
CD44-232ENST00000531118 TRAF3IP2O43734 574 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 RSL1D1O76021 490 aaKnown RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 HMGN2P05204 90 aaKnown RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 GSTA2P09210 222 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 RBP1P09455 135 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 UBTFL6P0CB48 400 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 IMPDH2P12268 514 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 ZNF12P17014 697 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 STX2P32856 288 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 ARR3P36575 388 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 FRKP42685 505 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 MTNR1AP48039 350 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 SELENOPP49908 381 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 LOXL3P58215 753 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 RPS23P62266 143 aaKnown RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 SLC35A1P78382 337 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 DR1Q01658 176 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 CLCQ05315 142 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 HLXQ14774 488 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 PAQR6Q6TCH4 344 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 GPRIN3Q6ZVF9 776 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 GRINAQ7Z429 371 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 JAZF1Q86VZ6 243 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 PARP8Q8N3A8 854 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 KCNA7Q96RP8 456 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 NAA11Q9BSU3 229 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 IQCGQ9H095 443 aaKnown RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 SIRT3Q9NTG7 399 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 ZCCHC3Q9NUD5 404 aaKnown RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 LEF1Q9UJU2 399 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 FZR1Q9UM11 496 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 SOX21Q9Y651 276 aaPredicted RBP6.97□□□□□ -1.29
CD44-232ENST00000531118 HYDINQ4G0P3 5121 aa6.97□□□□□ -1.29
CD44-232ENST00000531118 IGHV3OR16-10A0A075B7F0 116 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 EIF3HO15372 352 aaKnown RBP eCLIP6.96□□□□□ -1.3
CD44-232ENST00000531118 HOXA3O43365 443 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 BCAS1O75363 584 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 FOXH1O75593 365 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 UPK3AO75631 287 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 URI1O94763 535 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 CSTAP01040 98 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 IGHMP01871 453 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 ENO1P06733 434 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 IGHV4-38-2P0DP08 117 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 CCNA2P20248 432 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 EFNA1P20827 205 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 GLRXP35754 106 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 RAD52P43351 418 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 CLK1P49759 484 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 ROR2Q01974 943 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 ZNF154Q13106 437 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 NKPD1Q17RQ9 610 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 ALKBH6Q3KRA9 238 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 MMEL1Q495T6 779 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 SPDYAQ5MJ70 313 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 EMBQ6PCB8 327 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 FIP1L1Q6UN15 594 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 C3orf62Q6ZUJ4 267 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 KLHL7Q8IXQ5 586 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 GLB1L3Q8NCI6 653 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 FAM71CQ8NEG0 241 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 ZNF563Q8TA94 476 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 METTL6Q8TCB7 284 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 ANP32BQ92688 251 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 KTI12Q96EK9 354 aaPredicted RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 TIMD4Q96H15 378 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 EGLN2Q96KS0 407 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 MRI1Q9BV20 369 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 SF3B5Q9BWJ5 86 aaKnown RBP6.96□□□□□ -1.3
CD44-232ENST00000531118 NMUR2Q9GZQ4 415 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 SERHL2Q9H4I8 314 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 TCF7L1Q9HCS4 588 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 MMP26Q9NRE1 261 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 SEC14L4Q9UDX3 406 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 KCNE5Q9UJ90 142 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 PCDHGB4Q9UN71 923 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 TRAPPC4Q9Y296 219 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 JRKLQ9Y4A0 524 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 RNF114Q9Y508 228 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 CACNG2Q9Y698 323 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 KCNE3Q9Y6H6 103 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 DOCK11Q5JSL3 2073 aa6.96□□□□□ -1.3
CD44-232ENST00000531118 TRAV40A0A0B4J280 105 aa6.95□□□□□ -1.3
CD44-232ENST00000531118 IGHV1-69-2A0A0G2JMI3 117 aa6.95□□□□□ -1.3
CD44-232ENST00000531118 TMEM72A0PK05 275 aa6.95□□□□□ -1.3
CD44-232ENST00000531118 ISPDA4D126 451 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms