RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NKX2-2O95096 273 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 TYRP1P17643 537 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 CXCL2P19875 107 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 DPP4P27487 766 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 AQP2P41181 271 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 CCR4P51679 360 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 LCN6P62502 163 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 MFSD13AQ14CX5 517 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 PWWP2BQ6NUJ5 590 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ULK3Q6PHR2 472 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 TMEM65Q6PI78 240 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 CSNK1A1LQ8N752 337 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ANKRD9Q96BM1 317 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 OR1F2PQ96R84 312 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 GAL3ST1Q99999 423 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 CCDC3Q9BQI4 270 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 NANSQ9NR45 359 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 IKZF2Q9UKS7 526 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ICAM5Q9UMF0 924 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF281Q9Y2X9 895 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 AIPO00170 330 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 TSPAN4O14817 238 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 FBXO45P0C2W1 286 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 HTR4Q13639 388 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 YOD1Q5VVQ6 348 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 METTL11BQ5VVY1 283 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 TMPRSS12Q86WS5 348 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 CMIPQ8IY22 773 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 POMGNT2Q8NAT1 580 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 RCBTB1Q8NDN9 531 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ADAD1Q96M93 576 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNF426Q9BUY5 554 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 PIPOXQ9P0Z9 390 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 POMT2Q9UKY4 750 aa8.47□□□□□ -1.05
LIMCH1-215ENST00000512632 SDK1Q7Z5N4 2213 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 CSTAP01040 98 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 RLN1P04808 185 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 RRASP10301 218 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 ADH7P40394 386 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 MAP3K8P41279 467 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 CDKN2AP42771 156 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 P2RX1P51575 399 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 KIAA1024LP59773 190 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 TMEM196Q5HYL7 178 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 TMEM240Q5SV17 173 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 FAM69AQ5T7M9 428 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 LIPNQ5VXI9 398 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 ALKAL2Q6UX46 152 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 UNQ9370/PRO34162Q6UXP9 181 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 CA13Q8N1Q1 262 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 RBM18Q96H35 190 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 ALG12Q9BV10 488 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 NUP50Q9UKX7 468 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 F13BP05160 661 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 CBFBQ13951 182 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 ZNHIT3Q15649 155 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 NUDT18Q6ZVK8 323 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 OR10AC1Q8NH08 325 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 ING1Q9UK53 422 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 KLHDC2Q9Y2U9 406 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 OR10H1Q9Y4A9 318 aa8.46□□□□□ -1.05
LIMCH1-215ENST00000512632 CHURC1-FNTBB4DL54 471 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 CTDSPLO15194 276 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 PLRG1O43660 514 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 GALR3O60755 368 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 AK1P00568 194 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ADRA2CP18825 462 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 BAIAP2L2Q6UXY1 529 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 C3P1Q6ZMU1 363 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 PARGQ86W56 976 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 COQ8AQ8NI60 647 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 GINS4Q9BRT9 223 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ULBP3Q9BZM4 244 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 LYRM4Q9HD34 91 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 FAM60AQ9NP50 221 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 FBXL21Q9UKT6 434 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 HEATR5AQ86XA9 2040 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 A0A0A6YYC8 382 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 TEX51A0A1B0GUA7 166 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 H0YC42 278 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 I3L1I5 382 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ARPC5O15511 151 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 RAD1O60671 282 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ATF4P18848 351 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 AP3S2P59780 193 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ZCCHC12Q6PEW1 402 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 STAC2Q6ZMT1 411 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 RIT1Q92963 219 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 RBPMSQ93062 196 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 CTHRC1Q96CG8 243 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 BMFQ96LC9 184 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 NPDC1Q9NQX5 325 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 AKAP7Q9P0M2 348 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 FOXJ3Q9UPW0 622 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 NPTNQ9Y639 398 aa8.46□□□□□ -1.06
LIMCH1-215ENST00000512632 PYCARD-AS1I3L0S3 204 aa8.45□□□□□ -1.06
LIMCH1-215ENST00000512632 DCTN6O00399 190 aa8.45□□□□□ -1.06
LIMCH1-215ENST00000512632 PDCD5O14737 125 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms