RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 Q6ZTC4 211 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 CHMP1BQ7LBR1 199 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 C16orf62Q7Z3J2 963 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 P4HA3Q7Z4N8 544 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 CAMKMTQ7Z624 323 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 LUZP2Q86TE4 346 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 RNF130Q86XS8 419 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 GRAMD2AQ8IUY3 354 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 LACC1Q8IV20 430 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 PRR18Q8N4B5 295 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 NATD1Q8N6N6 113 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 CNEP1R1Q8N9A8 125 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 RELL2Q8NC24 303 aaPredicted RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 OR8J2Q8NGG1 315 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 OR9I1Q8NGQ6 314 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 B4GALNT2Q8NHY0 566 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 LINC01560Q8TB33 94 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ZPLD1Q8TCW7 415 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 SFXN5Q8TD22 340 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 GPR119Q8TDV5 335 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 LRRC8CQ8TDW0 803 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 DYDC1Q8WWB3 177 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ROBO4Q8WZ75 1007 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 NRGNQ92686 78 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 VPS33AQ96AX1 596 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 DNAJA3Q96EY1 480 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ZNF845Q96IR2 970 aaPredicted RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 SLC35G5Q96KT7 338 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 RNF145Q96MT1 663 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 CCDC115Q96NT0 180 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 STACQ99469 402 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ZBTB18Q99592 522 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 SH3GL2Q99962 352 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 EBF4Q9BQW3 602 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 SLC35A5Q9BS91 424 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 THAP7Q9BT49 309 aaPredicted RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 DPCDQ9BVM2 203 aaPredicted RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 C1orf43Q9BWL3 253 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 WDR12Q9GZL7 423 aaKnown RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 MYLK2Q9H1R3 596 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 PTGES2Q9H7Z7 377 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 MED17Q9NVC6 651 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ZNF446Q9NWS9 450 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ITGB1BP2Q9UKP3 347 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 ABCG2Q9UNQ0 655 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 PCDHGB3Q9Y5G1 929 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 PHF3Q92576 2039 aaKnown RBP4.05□□□□□ -1.76
NUP54-206ENST00000508465 EXPH5Q8NEV8 1989 aa4.05□□□□□ -1.76
NUP54-206ENST00000508465 HRNRQ86YZ3 2850 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 A0A1W2PNV4 684 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 MBD3L4A6NDZ8 208 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 MBD3L3A6NE82 208 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 SERINC4A6NH21 518 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 MBD3L5A6NJ08 208 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 SLC22A20A6NK97 555 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 E9PBE3 544 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 NPIPB9F8W1W9 429 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 SLCO1B7G3V0H7 640 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 H3BNH8 94 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 HMGN4O00479 90 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 RFXANKO14593 260 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 TNFSF11O14788 317 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 CXCL13O43927 109 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 STX11O75558 287 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 AQP8O94778 261 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 RCBTB2O95199 551 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 H6PDO95479 791 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 NGFRP08138 427 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 IFI6P09912 130 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 LINGO3P0C6S8 592 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 UBTFL6P0CB48 400 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 NR2F1P10589 423 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 ETFAP13804 333 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 IDO1P14902 403 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 ZNF708P17019 499 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 IGFBP2P18065 325 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 NCF2P19878 526 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 KLK2P20151 261 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 CCNA2P20248 432 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 RYKP34925 604 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 PTGER4P35408 488 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 CCR4P51679 360 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 ZNF41P51814 821 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 POLR2JP52435 117 aaKnown RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 CLNS1AP54105 237 aaKnown RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 AQP5P55064 265 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 CARD18P57730 90 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 PSPHP78330 225 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 ZNF91Q05481 1191 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 FAM27E3Q08E93 113 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 FUT5Q11128 374 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 PON3Q15166 354 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 SF3B4Q15427 424 aaKnown RBP eCLIP4.04□□□□□ -1.765e-6■■■□□ 16.4
NUP54-206ENST00000508465 SGCBQ16585 318 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 EXOC3L2Q2M3D2 409 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 PLPPR5Q32ZL2 321 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 SLC25A35Q3KQZ1 300 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 ARHGAP11BQ3KRB8 267 aa4.04□□□□□ -1.76
NUP54-206ENST00000508465 TMEM176BQ3YBM2 270 aaPredicted RBP4.04□□□□□ -1.76
NUP54-206ENST00000508465 GLYR1Q49A26 553 aaPredicted RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms