RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ZIC1Q15915 447 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 FAM83EQ2M2I3 478 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 HIKESHIQ53FT3 197 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CTSL3PQ5NE16 218 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 RAET1LQ5VY80 246 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ERICH5Q6P6B1 374 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 LUZP2Q86TE4 346 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 VPS36Q86VN1 386 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 SLC22A16Q86VW1 577 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CD302Q8IX05 232 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 TCAIMQ8N3R3 496 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 OR4C5Q8NGB2 326 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 GLYATL2Q8WU03 294 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 LHX4Q969G2 390 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 SLC35B4Q969S0 331 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 VSTM2LQ96N03 204 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CATSPER2Q96P56 530 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ACCSQ96QU6 501 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 PANX2Q96RD6 677 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 CCNL2Q96S94 520 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ROPN1BQ9BZX4 212 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 TRIM4Q9C037 500 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 BLZF1Q9H2G9 400 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 C8orf33Q9H7E9 229 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ELOVL3Q9HB03 270 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 PDP1Q9P0J1 537 aaPredicted RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 PIPOXQ9P0Z9 390 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 LHX3Q9UBR4 397 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 ANGPTL2Q9UKU9 493 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 SLIT3O75094 1523 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 NFAT5O94916 1531 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 GLI3P10071 1580 aa3.83□□□□□ -1.8
SF3B1-212ENST00000496458 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.83□□□□□ -1.8
SF3B1-212ENST00000496458 RGPD2P0DJD1 1756 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 NRAPQ86VF7 1730 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 LMO7Q8WWI1 1683 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 RGS12O14924 1447 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ATP10DQ9P241 1426 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 A0A0J9YYE9 177 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 GOLGA8TH3BQL2 631 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF701M0R085 212 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ABCD4O14678 606 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 DFNA5O60443 496 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 JAK2O60674 1132 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 TRBC1P01850 177 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 CRYGBP07316 175 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 HPGDP15428 266 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF3P17036 446 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 SRMP19623 302 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ALDH3B2P48448 385 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 RAB9AP51151 201 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 SEC61GP60059 68 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 RPS15P62841 145 aaKnown RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 NOP14P78316 857 aaKnown RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 EIF4EBP2Q13542 120 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 CAMK4Q16566 473 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PARP6Q2NL67 630 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 AGBL2Q5U5Z8 902 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ATL3Q6DD88 541 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF530Q6P9A1 599 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ATRAIDQ6UW56 229 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 C6orf89Q6UWU4 347 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 CEP112Q8N8E3 955 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 SYT14Q8NB59 555 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 KCNG3Q8TAE7 436 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 P3H4Q92791 437 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF707Q96C28 371 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 LRRC45Q96CN5 670 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 HPDLQ96IR7 371 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PRRC1Q96M27 445 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PANX1Q96RD7 426 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 NDUFAF3Q9BU61 184 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ELOVL4Q9GZR5 314 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 VCX3BQ9H321 246 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 FAM124BQ9H5Z6 455 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 GEMIN7Q9H840 131 aaKnown RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 ISG20L2Q9H9L3 353 aaKnown RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 SPACA1Q9HBV2 294 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 SLC2A8Q9NY64 477 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 GCNT4Q9P109 453 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PISDQ9UG56 409 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 APOBEC3BQ9UH17 382 aaKnown RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PACSIN2Q9UNF0 486 aaPredicted RBP3.82□□□□□ -1.8
SF3B1-212ENST00000496458 PIGLQ9Y2B2 252 aa3.82□□□□□ -1.8
SF3B1-212ENST00000496458 USP54Q70EL1 1684 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 CDK12Q9NYV4 1490 aaPredicted RBP3.81□□□□□ -1.8
SF3B1-212ENST00000496458 CRB1P82279 1406 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 IGLV8-61A0A075B6I0 122 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 SNTNA6NMZ2 147 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 C11orf98E9PRG8 122 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 SLC17A2O00624 439 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 CFLARO15519 480 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 ZSCAN12O43309 604 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF189O75820 626 aaPredicted RBP3.81□□□□□ -1.8
SF3B1-212ENST00000496458 ACTL6AO96019 429 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 PRB2P02812 416 aaPredicted RBP3.81□□□□□ -1.8
SF3B1-212ENST00000496458 TPSB2P20231 275 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 PCMT1P22061 227 aa3.81□□□□□ -1.8
SF3B1-212ENST00000496458 PSMA2P25787 234 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms