RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	KLHL9	Q9P2J3	617 aa		12.14	□□□□□ -0.47
APTX-231	ENST00000494973	DSP	P15924	2871 aa	Known RBP	12.14	□□□□□ -0.47
APTX-231	ENST00000494973	CACNA1B	Q00975	2339 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	TRAV27	A0A087WT01	109 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973		A0A1W2PRG6	482 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	NPIPA2	E9PIF3	369 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	NPIPA3	F8WFD2	350 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	BLOC1S5-TXNDC5	H3BN57	136 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	PLPP3	O14495	311 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	GPR171	O14626	319 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	IMPA2	O14732	288 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	RNF13	O43567	381 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	PTP4A3	O75365	173 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	HMGN1	P05114	100 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	NR2C1	P13056	603 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	SUCLG1	P53597	346 aa	Known RBP	12.13	□□□□□ -0.47
APTX-231	ENST00000494973	H3F3A	P84243	136 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	LTB	Q06643	244 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	RPL18	Q07020	188 aa	Known RBP	12.13	□□□□□ -0.47
APTX-231	ENST00000494973	NFATC3	Q12968	1075 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	IL18R1	Q13478	541 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	C1D	Q13901	141 aa	Known RBP	12.13	□□□□□ -0.47
APTX-231	ENST00000494973	KEAP1	Q14145	624 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	SLC36A3	Q495N2	470 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	EMC4	Q5J8M3	183 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	ABLIM2	Q6H8Q1	611 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	OR2A2	Q6IF42	318 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	PCSK4	Q6UW60	755 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	GALNT5	Q7Z7M9	940 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	UEVLD	Q8IX04	471 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	MCEMP1	Q8IX19	187 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	DHRSX	Q8N5I4	330 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	ST6GALNAC3	Q8NDV1	305 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	SETD9	Q8NE22	299 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	FAM57A	Q8TBR7	257 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	CPT1C	Q8TCG5	803 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	OXGR1	Q96P68	337 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	SLC38A2	Q96QD8	506 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	UCN2	Q96RP3	112 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	GPA33	Q99795	319 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	APOL4	Q9BPW4	351 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	MCCC2	Q9HCC0	563 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	ASF1B	Q9NVP2	202 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	REV1	Q9UBZ9	1251 aa		12.13	□□□□□ -0.47
APTX-231	ENST00000494973	SLC22A20	A6NK97	555 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	LRRN3	E7EW58	273 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	ARPC3	O15145	178 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	SLC16A6	O15403	523 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	CYTIP	O60759	359 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	AKR7A3	O95154	331 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	SOX14	O95416	240 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	IFNG	P01579	166 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	IGHM	P01871	453 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	OPN1LW	P04000	364 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TPO	P07202	933 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	CD14	P08571	375 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	ZNF43	P17038	809 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	AHCY	P23526	432 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	POU1F1	P28069	291 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	NOS3	P29474	1203 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	GRK5	P34947	590 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	SLC16A1	P53985	500 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	CDC42	P60953	191 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	CASP12	Q6UXS9	341 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	FCRLA	Q7L513	359 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	P4HA3	Q7Z4N8	544 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	DEPDC4	Q8N2C3	294 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	LRRC17	Q8N6Y2	441 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	RNF128	Q8TEB7	428 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	ADAD1	Q96M93	576 aa	Known RBP	12.12	□□□□□ -0.47
APTX-231	ENST00000494973	ZFP3	Q96NJ6	502 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TNFRSF13C	Q96RJ3	184 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TM9SF2	Q99805	663 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	ADI1	Q9BV57	179 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	IFT27	Q9BW83	186 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TSSK6	Q9BXA6	273 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	POLDIP3	Q9BY77	421 aa	Known RBP	12.12	□□□□□ -0.47
APTX-231	ENST00000494973	SRXN1	Q9BYN0	137 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TP63	Q9H3D4	680 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-231	ENST00000494973	TOR3A	Q9H497	397 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	RNF122	Q9H9V4	155 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	CALHM2	Q9HA72	323 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	RAB26	Q9ULW5	256 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973	KIAA1549	Q9HCM3	1950 aa		12.12	□□□□□ -0.47
APTX-231	ENST00000494973		A6NIZ1	184 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	CD8B2	A6NJW9	211 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	ZAR1L	A6NP61	321 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	CLCA1	A8K7I4	914 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	CENPBD1	B2RD01	187 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	MCIDAS	D6RGH6	385 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	SMAD9	O15198	467 aa	Known RBP	12.11	□□□□□ -0.47
APTX-231	ENST00000494973	MPZL2	O60487	215 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	SNAP29	O95721	258 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	CAPG	P40121	348 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	AQP2	P41181	271 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	AQP4	P55087	323 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	TPD52	P55327	224 aa	Predicted RBP	12.11	□□□□□ -0.47
APTX-231	ENST00000494973	RAP1B	P61224	184 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	RAP1A	P62834	184 aa		12.11	□□□□□ -0.47
APTX-231	ENST00000494973	PON3	Q15166	354 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms