RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 MUS81Q96NY9 551 aa21.68■■□□□ 1.06
UPF3A-209ENST00000492270 MOGAT1Q96PD6 335 aa21.68■■□□□ 1.06
UPF3A-209ENST00000492270 ALKBH3Q96Q83 286 aaPredicted RBP21.68■■□□□ 1.06
UPF3A-209ENST00000492270 PIP5K1AQ99755 562 aa21.68■■□□□ 1.06
UPF3A-209ENST00000492270 ELAC2Q9BQ52 826 aaKnown RBP21.68■■□□□ 1.06
UPF3A-209ENST00000492270 TMUB1Q9BVT8 246 aa21.68■■□□□ 1.06
UPF3A-209ENST00000492270 AMBRA1Q9C0C7 1298 aa21.68■■□□□ 1.06
UPF3A-209ENST00000492270 FAM220BPB1ANY3 271 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 CHP2O43745 196 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 CLDN17P56750 224 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 SLC25A3Q00325 362 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 FOXD4Q12950 439 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-209ENST00000492270 LINC00114Q6XXX2 140 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 LINGO2Q7L985 606 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 POMGNT2Q8NAT1 580 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 ADAMTS16Q8TE57 1224 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 IGFBPL1Q8WX77 278 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 TMEM43Q9BTV4 400 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 FAM107BQ9H098 131 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 CMTM6Q9NX76 183 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 ACANP16112 2415 aa21.67■■□□□ 1.06
UPF3A-209ENST00000492270 CCDC22O60826 627 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 SMPD2O60906 423 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 UPK3AO75631 287 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 HPRP00739 348 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 ZNF43P17038 809 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 CDH2P19022 906 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-209ENST00000492270 MPGP29372 298 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 HOXC12P31275 282 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 ZNF83P51522 516 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 NKX6-1P78426 367 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-209ENST00000492270 IL1RL1Q01638 556 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 VEZF1Q14119 521 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 OR7E24Q6IFN5 339 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 ERICH5Q6P6B1 374 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 H1FNTQ75WM6 255 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-209ENST00000492270 ZNF611Q8N823 705 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 WDR31Q8NA23 367 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 RASSF5Q8WWW0 418 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 OXGR1Q96P68 337 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 EPYCQ99645 322 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 C1QTNF6Q9BXI9 259 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 SLC7A7Q9UM01 511 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 SH3GLB1Q9Y371 365 aa21.66■■□□□ 1.06
UPF3A-209ENST00000492270 MS4A18H0YCH9 400 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 CD99P14209 185 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 GYS2P54840 703 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 SPOCK1Q08629 439 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 MS4A18Q3C1V0 323 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 CARM1Q86X55 608 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 C1orf162Q8NEQ5 155 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-209ENST00000492270 OR2T12Q8NG77 320 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 OR6S1Q8NH40 331 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 PERPQ96FX8 193 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 SLC41A3Q96GZ6 507 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 SLC17A5Q9NRA2 495 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 B3GALT5Q9Y2C3 310 aa21.65■■□□□ 1.06
UPF3A-209ENST00000492270 USF3Q68DE3 2245 aa21.64■■□□□ 1.06
UPF3A-209ENST00000492270 ALPK2Q86TB3 2170 aa21.64■■□□□ 1.06
UPF3A-209ENST00000492270 TRAPPC13A5PLN9 417 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 ABCD4O14678 606 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 TRAF3IP2O43734 574 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 SHOX2O60902 331 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 KRT33AO76009 404 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 HLA-DOBP13765 273 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 NQO1P15559 274 aaKnown RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 C1DQ13901 141 aaKnown RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 ZNF672Q499Z4 452 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 LRRC23Q53EV4 343 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-209ENST00000492270 HIKESHIQ53FT3 197 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 MICU2Q8IYU8 434 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 C10orf53Q8N6V4 93 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 ADPRHL1Q8NDY3 354 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 PROX1Q92786 737 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 ASPNQ9BXN1 380 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 PCDHAC1Q9H158 963 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 PLCE1Q9P212 2302 aa21.64■■□□□ 1.05
UPF3A-209ENST00000492270 SHISA9B4DS77 424 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 ZNF587BE7ETH6 402 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 ZNF432O94892 652 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 DRD4P21917 467 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 TGFBR3Q03167 851 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 MFSD13AQ14CX5 517 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 Q5PR19 223 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 SSX8Q7RTT4 187 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 SLC15A3Q8IY34 581 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 C17orf78Q8N4C9 275 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 FBXW5Q969U6 566 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 MYLK2Q9H1R3 596 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 BAG5Q9UL15 447 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 LAMP3Q9UQV4 416 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 RCE1Q9Y256 329 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 CORINQ9Y5Q5 1042 aa21.63■■□□□ 1.05
UPF3A-209ENST00000492270 ELOVL7A1L3X0 281 aa21.62■■□□□ 1.05
UPF3A-209ENST00000492270 M0R1B8 84 aa21.62■■□□□ 1.05
UPF3A-209ENST00000492270 KPNA4O00629 521 aaPredicted RBP21.62■■□□□ 1.05
UPF3A-209ENST00000492270 LSP1P33241 339 aa21.62■■□□□ 1.05
UPF3A-209ENST00000492270 OR1E2P47887 323 aa21.62■■□□□ 1.05
UPF3A-209ENST00000492270 PMS2P3Q13401 168 aa21.62■■□□□ 1.05
UPF3A-209ENST00000492270 CYBRD1Q53TN4 286 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms