RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CLDN17P56750 224 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 ZNF613Q6PF04 617 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 NHLRC1Q6VVB1 395 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 CARM1Q86X55 608 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 MICU2Q8IYU8 434 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 KBTBD8Q8NFY9 601 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 ADAMTS16Q8TE57 1224 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 AKAP1Q92667 903 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL9A3-214ENST00000490398 PRSS27Q9BQR3 290 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 C1QTNF6Q9BXI9 259 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 SLCO5A1Q9H2Y9 848 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 EVA1AQ9H8M9 152 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 SELENONQ9NZV5 590 aa15.92■□□□□ 0.14
COL9A3-214ENST00000490398 TRAF3IP2O43734 574 aaPredicted RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 CHP2O43745 196 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 OR2T1O43869 369 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 ZNF432O94892 652 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 CDH2P19022 906 aaPredicted RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 GTF2E2P29084 291 aaKnown RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 KDELR2P33947 212 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 OR1E2P47887 323 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 SLC7A2P52569 658 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 ADAM8P78325 824 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 LIPEQ05469 1076 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 SPOCK1Q08629 439 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 LRRC23Q53EV4 343 aaPredicted RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 CYBRD1Q53TN4 286 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 SWT1Q5T5J6 900 aaKnown RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 ADAM5Q6NVV9 412 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 H1FNTQ75WM6 255 aaPredicted RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 WFDC11Q8NEX6 87 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 OR2T12Q8NG77 320 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 SLC41A3Q96GZ6 507 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 OXGR1Q96P68 337 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 ALKBH3Q96Q83 286 aaPredicted RBP15.91■□□□□ 0.14
COL9A3-214ENST00000490398 TMEM43Q9BTV4 400 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 AMBRA1Q9C0C7 1298 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 PCDHAC1Q9H158 963 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 SLC7A7Q9UM01 511 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 RNF115Q9Y4L5 304 aa15.91■□□□□ 0.14
COL9A3-214ENST00000490398 ELOVL7A1L3X0 281 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 GMNCA6NCL1 334 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 KPNA4O00629 521 aaPredicted RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 CD3EP07766 207 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 ZNF83P51522 516 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 GNGT1P63211 74 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 FOXD4Q12950 439 aaPredicted RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 HIKESHIQ53FT3 197 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 PHYHD1Q5SRE7 291 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 ERICH5Q6P6B1 374 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 C5orf46Q6UWT4 87 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 TGIF2LYQ8IUE0 185 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 NKAIN4Q8IVV8 208 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 LRRC17Q8N6Y2 441 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 OR6S1Q8NH40 331 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 ZNF837Q96EG3 531 aaPredicted RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 TXNDC15Q96J42 360 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 CCL19Q99731 98 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 USB1Q9BQ65 265 aaKnown RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 ESRP2Q9H6T0 727 aaKnown RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 BEX4Q9NWD9 120 aaPredicted RBP15.9■□□□□ 0.14
COL9A3-214ENST00000490398 EDARQ9UNE0 448 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 B3GALT5Q9Y2C3 310 aa15.9■□□□□ 0.14
COL9A3-214ENST00000490398 TRAPPC13A5PLN9 417 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 HS3ST1O14792 307 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 ZNF43P17038 809 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 MPGP29372 298 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 HOXC12P31275 282 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 NUDT2P50583 147 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 PIN1Q13526 163 aaPredicted RBP15.89■□□□□ 0.13
COL9A3-214ENST00000490398 DEF8Q6ZN54 512 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 C20orf204Q6ZNR8 217 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 P2RY8Q86VZ1 359 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 C10orf53Q8N6V4 93 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 POMGNT2Q8NAT1 580 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 ADPRHL1Q8NDY3 354 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 PROX1Q92786 737 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 MUCL1Q96DR8 90 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 ZNF426Q9BUY5 554 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 EMC6Q9BV81 110 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 TMUB1Q9BVT8 246 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 SLC17A5Q9NRA2 495 aa15.89■□□□□ 0.13
COL9A3-214ENST00000490398 SHISA9B4DS77 424 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 PLPP3O14495 311 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 CH25HO95992 272 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 GSK3BP49841 420 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 LSM11P83369 360 aaKnown RBP eCLIP15.88■□□□□ 0.13
COL9A3-214ENST00000490398 IL1RL1Q01638 556 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 PMS2P3Q13401 168 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 C1DQ13901 141 aaKnown RBP15.88■□□□□ 0.13
COL9A3-214ENST00000490398 ZNF74Q16587 644 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 VTCN1Q7Z7D3 282 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 CPLX4Q7Z7G2 160 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 TMEM123Q8N131 208 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 ZNF611Q8N823 705 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 OR1K1Q8NGR3 316 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 PFN4Q8NHR9 129 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 RASSF5Q8WWW0 418 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 TPD52L3Q96J77 140 aa15.88■□□□□ 0.13
COL9A3-214ENST00000490398 OR2M2Q96R28 347 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms