RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	TMPPE	Q6ZT21	453 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	AHSA2	Q719I0	299 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	H1FNT	Q75WM6	255 aa	Predicted RBP	10.08	□□□□□ -0.8
APTX-223	ENST00000479656	CXXC5	Q7LFL8	322 aa	Known RBP	10.08	□□□□□ -0.8
APTX-223	ENST00000479656	TMEM251	Q8N6I4	163 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	CYB561A3	Q8NBI2	242 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	BBS1	Q8NFJ9	593 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	PTP4A1	Q93096	173 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656		Q96M85	177 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	SFXN2	Q96NB2	322 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	CCDC90B	Q9GZT6	254 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	MED20	Q9H944	212 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	B4GALT7	Q9UBV7	327 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF346	Q9UL40	294 aa	Known RBP	10.08	□□□□□ -0.8
APTX-223	ENST00000479656	HDGFL3	Q9Y3E1	203 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	CORIN	Q9Y5Q5	1042 aa		10.08	□□□□□ -0.8
APTX-223	ENST00000479656	RIIAD1	A6NNX1	92 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	KDM4E	B2RXH2	506 aa	Predicted RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656		H0YC42	278 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	SULT2B1	O00204	365 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	GLS	O94925	669 aa	Predicted RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	PLG	P00747	810 aa	Predicted RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	TFAP2A	P05549	437 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	HPN	P05981	417 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	DIO1	P49895	249 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	PPIA	P62937	165 aa	Known RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	MVK	Q03426	396 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	TLE3	Q04726	772 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	CRMP1	Q14194	572 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	ARHGAP11A	Q6P4F7	1023 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	FAM122B	Q7Z309	247 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	TMEM99	Q8N816	258 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	ZFP62	Q8NB50	900 aa	Predicted RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	FAM98A	Q8NCA5	519 aa	Known RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	SDR9C7	Q8NEX9	313 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	RASD2	Q96D21	266 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	HCAR1	Q9BXC0	346 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	CHST11	Q9NPF2	352 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	INIP	Q9NRY2	104 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	ALKBH4	Q9NXW9	302 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	H2AFY2	Q9P0M6	372 aa	Predicted RBP	10.07	□□□□□ -0.8
APTX-223	ENST00000479656	TRAPPC4	Q9Y296	219 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	SLC6A5	Q9Y345	797 aa		10.07	□□□□□ -0.8
APTX-223	ENST00000479656	CNTRL	Q7Z7A1	2325 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656		A0A0J9YW62	118 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TEX13C	A0A0J9YWL9	993 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	PRR23D1	E9PI22	279 aa	Predicted RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	IMPA2	O14732	288 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	PRODH	O43272	600 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	IDH3B	O43837	385 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	IFNG	P01579	166 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	STS	P08842	583 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	PRR23D2	P0DMB1	279 aa	Predicted RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	DBT	P11182	482 aa	Known RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	HLA-DOB	P13765	273 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF3	P17036	446 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ACVR2A	P27037	513 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	GFRA1	P56159	465 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	CLDN20	P56880	219 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TUBA4A	P68366	448 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ZP4	Q12836	540 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	HYAL4	Q2M3T9	481 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	NXNL2	Q5VZ03	156 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF773	Q6PK81	442 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SPART	Q8N0X7	666 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	GHDC	Q8N2G8	530 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SCAI	Q8N9R8	606 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SLC37A3	Q8NCC5	494 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	IPCEF1	Q8WWN9	437 aa	Predicted RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	MIB2	Q96AX9	1013 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	DTNBP1	Q96EV8	351 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TSPAN32	Q96QS1	320 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	NMNAT3	Q96T66	252 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	COPS4	Q9BT78	406 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	NDEL1	Q9GZM8	345 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	FN3K	Q9H479	309 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	FKBP14	Q9NWM8	211 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	GRHPR	Q9UBQ7	328 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	KLHL21	Q9UJP4	597 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	RAX	Q9Y2V3	346 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	RPL36	Q9Y3U8	105 aa	Known RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TRAV17	A0A0B4J275	112 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TRIM64C	A6NLI5	447 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF814	B7Z6K7	855 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656		K7ENP7	123 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	LOC400499	M0QZD8	3231 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	TNFSF11	O14788	317 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	RGS10	O43665	173 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	PMS2P2	O95744	297 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	FREM3	P0C091	2139 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	CLU	P10909	449 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	APEH	P13798	732 aa	Known RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	KLK2	P20151	261 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	C21orf33	P30042	268 aa	Predicted RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SDHA	P31040	664 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	CDKN2A	P42771	156 aa	Known RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SLC15A1	P46059	708 aa		10.06	□□□□□ -0.8
APTX-223	ENST00000479656	SUCLG1	P53597	346 aa	Known RBP	10.06	□□□□□ -0.8
APTX-223	ENST00000479656	ZNF91	Q05481	1191 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms