RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OGDHQ02218 1023 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 PSG7Q13046 419 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 OR5I1Q13606 314 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 ARFRP1Q13795 201 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NSDHLQ15738 373 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 PAGE3Q5JUK9 113 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 MARCH8Q5T0T0 291 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 Q6P435 159 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 ENPP6Q6UWR7 440 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 DCAF4L2Q8NA75 395 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 LINC01555Q8NAE3 123 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 C20orf203Q8NBC4 194 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 OR10G3Q8NGC4 313 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NEIL3Q8TAT5 605 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NT5C3BQ969T7 300 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 TCEANC2Q96MN5 208 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 P2RY13Q9BPV8 354 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NAT9Q9BTE0 207 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 TRIM62Q9BVG3 475 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 ACTR6Q9GZN1 396 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 SLC25A22Q9H936 323 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF639Q9UID6 485 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 TMCO1Q9UM00 188 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 HPCAL4Q9UM19 191 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 NEUROG3Q9Y4Z2 214 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 RLFQ13129 1914 aa1.93□□□□□ -2.1
CCDC88A-212ENST00000474059 LTBP1Q14766 1721 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 FAM240BA0A1B0GVZ2 78 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ARHGEF35A5YM69 484 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 BTBD17A6NE02 478 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 OR5B21A6NL26 309 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 E9PBE3 544 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 TRAF3IP2O43734 574 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF861PO60384 105 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NPIPB7O75200 414 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 SERPINA3P01011 423 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 GAPDHP04406 335 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ETS2P15036 469 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 MX1P20591 662 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 CD1CP29017 333 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 BTCP35070 178 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 CTRLP40313 264 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 VDAC2P45880 294 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ARRB1P49407 418 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 DLX1P56177 255 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 TAS2R19P59542 299 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 RPL23AP62750 156 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 HMGN5P82970 282 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 BST1Q10588 318 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 DAZ2Q13117 558 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 DDX39BQ13838 428 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ATP6AP1Q15904 470 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 IMMTQ16891 758 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 RABL6Q3YEC7 729 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 PHYHD1Q5SRE7 291 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 CASC10Q5T4H9 136 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 AGBL2Q5U5Z8 902 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 Q6ZN92 141 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 UTS2BQ765I0 119 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 RALGPS2Q86X27 583 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NUDCD3Q8IVD9 361 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 MFSD6LQ8IWD5 586 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 PNKDQ8N490 385 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ACOT4Q8N9L9 421 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 SUMF2Q8NBJ7 301 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 FAM83FQ8NEG4 500 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 OR9G1Q8NH87 305 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 FAM151AQ8WW52 585 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ARPC1AQ92747 370 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 UCN3Q969E3 161 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 TM4SF19Q96DZ7 209 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ITCHQ96J02 903 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ZNF641Q96N77 438 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 KCNA7Q96RP8 456 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 FMO2Q99518 471 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 SLC25A39Q9BZJ4 359 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ROPN1BQ9BZX4 212 aaPredicted RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 PPA2Q9H2U2 334 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NXF3Q9H4D5 531 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 ANKRD19PQ9H560 264 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 AZI2Q9H6S1 392 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NIPAL2Q9H841 368 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NMRAL1Q9HBL8 299 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 DAZ3Q9NR90 486 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 MTRF1LQ9UGC7 380 aaKnown RBP1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 SUN2Q9UH99 717 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 KCNIP3Q9Y2W7 256 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NPTNQ9Y639 398 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 KANK1Q14678 1352 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 NACAE9PAV3 2078 aa1.92□□□□□ -2.1
CCDC88A-212ENST00000474059 KIR2DL5BA0A0G2JN68 375 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 KIR2DL5BA0A0G2JPC4 375 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 A0A1W2PPE3 182 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RBMY1BA6NDE4 496 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 RBMY1EA6NEQ0 496 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 GOLGA8SH3BPF8 625 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 HAS3O00219 553 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 AGPAT2O15120 278 aa1.91□□□□□ -2.1
CCDC88A-212ENST00000474059 FAM189A1O60320 539 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms