RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 RBM45Q8IUH3 476 aaKnown RBP15.74■□□□□ 0.11
UPF3A-203ENST00000474056 C1orf162Q8NEQ5 155 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-203ENST00000474056 OR6T1Q8NGN1 323 aa15.74■□□□□ 0.11
UPF3A-203ENST00000474056 ALKBH3Q96Q83 286 aaPredicted RBP15.74■□□□□ 0.11
UPF3A-203ENST00000474056 SLC17A5Q9NRA2 495 aa15.74■□□□□ 0.11
UPF3A-203ENST00000474056 B3GAT1Q9P2W7 334 aa15.74■□□□□ 0.11
UPF3A-203ENST00000474056 USP22Q9UPT9 525 aa15.74■□□□□ 0.11
UPF3A-203ENST00000474056 LOC100653049A0A140TA62 436 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CPSF4LA6NMK7 179 aaKnown RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 UPK3AO75631 287 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 KRT34O76011 436 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 BGLAPP02818 100 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 C8BP07358 591 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF43P17038 809 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CDH2P19022 906 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 MDH1P40925 334 aaKnown RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CLDN17P56750 224 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 ENTPD8Q5MY95 495 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 INTS11Q5TA45 600 aaKnown RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 LINGO2Q7L985 606 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CALHM3Q86XJ0 350 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 C17orf78Q8N4C9 275 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 OR8J3Q8NGG0 315 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 VANGL1Q8TAA9 524 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 SLC26A7Q8TE54 656 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 Q96MF0 132 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 OXGR1Q96P68 337 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF317Q96PQ6 595 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 C1QTNF6Q9BXI9 259 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 GSX1Q9H4S2 264 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CXorf56Q9H5V9 222 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 ARMCX1Q9P291 453 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 CAPN7Q9Y6W3 813 aa15.73■□□□□ 0.11
UPF3A-203ENST00000474056 LRRN3E7EW58 273 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 M0R1B8 84 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 FMO6PO60774 539 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 KRT33AO76009 404 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF432O94892 652 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 PAX1P15863 534 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 CDH11P55287 796 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 RPS4XP62701 263 aaKnown RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 TGFBR3Q03167 851 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 PGGHGQ32M88 737 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 PRSS57Q6UWY2 283 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 TMEM108Q6UXF1 575 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 H1FNTQ75WM6 255 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 CCDC80Q76M96 950 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 TSPYL5Q86VY4 417 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 POU5F2Q8N7G0 328 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 SMAP2Q8WU79 429 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 EPYCQ99645 322 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 SH3GL1Q99961 368 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 ECSITQ9BQ95 431 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF701Q9NV72 531 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 CISD1Q9NZ45 108 aaKnown RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 B3GALT5Q9Y2C3 310 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 AMDHD2Q9Y303 409 aa15.72■□□□□ 0.11
UPF3A-203ENST00000474056 MAGED1Q9Y5V3 778 aaPredicted RBP15.72■□□□□ 0.11
UPF3A-203ENST00000474056 SETD2Q9BYW2 2564 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF587BE7ETH6 402 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 MS4A18H0YCH9 400 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 CHP2O43745 196 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 TMCC2O75069 709 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 NPPAP01160 153 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 THY1P04216 161 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 FOSL1P15407 271 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 PTAFRP25105 342 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 CD40P25942 277 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 RIPPLY3P57055 190 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 IL1RL1Q01638 556 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 MS4A18Q3C1V0 323 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 HIKESHIQ53FT3 197 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 SWT1Q5T5J6 900 aaKnown RBP15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF613Q6PF04 617 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 KLHL17Q6TDP4 642 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 LINC00114Q6XXX2 140 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 WDR88Q6ZMY6 472 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ABHD12BQ7Z5M8 362 aaPredicted RBP15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ADPRHL1Q8NDY3 354 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 OR6S1Q8NH40 331 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ADAMTS16Q8TE57 1224 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 SLC41A3Q96GZ6 507 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 C18orf12Q96KH6 178 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 ZNF583Q96ND8 569 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 MOGAT1Q96PD6 335 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 TMEM43Q9BTV4 400 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 LINC00470Q9BZP3 86 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 RCE1Q9Y256 329 aa15.71■□□□□ 0.11
UPF3A-203ENST00000474056 OVOL3O00110 214 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 TRAF3IP2O43734 574 aaPredicted RBP15.7■□□□□ 0.1
UPF3A-203ENST00000474056 LYPD3O95274 346 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 HPRP00739 348 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 HLA-DOBP13765 273 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 NQO1P15559 274 aaKnown RBP15.7■□□□□ 0.1
UPF3A-203ENST00000474056 CDKN1AP38936 164 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 ATP5J2P56134 94 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 C1DQ13901 141 aaKnown RBP15.7■□□□□ 0.1
UPF3A-203ENST00000474056 MFSD13AQ14CX5 517 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 TBRG1Q3YBR2 411 aa15.7■□□□□ 0.1
UPF3A-203ENST00000474056 PCYOX1LQ8NBM8 494 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms